ICEberg 2.0: an updated database of bacterial integrative and conjugative elements
Liu, Meng, Li, Xiaobin, Xie, Yingzhou, Bi, Dexi, Sun, Jingyong, Li, Jun, Tai, Cui, Deng, Zixin, Ou, Hong-Yu
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
Ketogenic diet for human diseases: the underlying mechanisms and potential for clinical implementations
Zhu, Huiyuan, Bi, Dexi, Zhang, Youhua, Kong, Cheng, Du, Jiahao, Wu, Xiawei, Wei, Qing, Qin, Huanlong
Published in Signal transduction and targeted therapy (17.01.2022)
Published in Signal transduction and targeted therapy (17.01.2022)
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Journal Article
Fusobacterium nucleatum enhances the efficacy of PD-L1 blockade in colorectal cancer
Gao, Yaohui, Bi, Dexi, Xie, Ruting, Li, Man, Guo, Jing, Liu, Hu, Guo, Xianling, Fang, Juemin, Ding, Tingting, Zhu, Huiyuan, Cao, Yuan, Xing, Meichun, Zheng, Jiayi, Xu, Qing, Xu, Qian, Wei, Qing, Qin, Huanlong
Published in Signal transduction and targeted therapy (19.11.2021)
Published in Signal transduction and targeted therapy (19.11.2021)
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Journal Article
Complete Genome Sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a Multidrug-Resistant Strain Isolated from Human Sputum
Liu, Pinglei, Li, Peng, Jiang, Xiaofei, Bi, Dexi, Xie, Yingzhou, Tai, Cui, Deng, Zixin, Rajakumar, Kumar, Ou, Hong-Yu
Published in Journal of Bacteriology (01.04.2012)
Published in Journal of Bacteriology (01.04.2012)
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Journal Article
Assessment of the Xpert MTB/RIF Ultra assay on rapid diagnosis of extrapulmonary tuberculosis
Wu, Xiaocui, Tan, Guangkun, Gao, Rongliang, Yao, Lan, Bi, Dexi, Guo, Yinjuan, Yu, Fangyou, Fan, Lin
Published in International journal of infectious diseases (01.04.2019)
Published in International journal of infectious diseases (01.04.2019)
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Journal Article
TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea
Shao, Yucheng, Harrison, Ewan M, Bi, Dexi, Tai, Cui, He, Xinyi, Ou, Hong-Yu, Rajakumar, Kumar, Deng, Zixin
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Journal Article
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria
Bi, Dexi, Xu, Zhen, Harrison, Ewan M., Tai, Cui, Wei, Yiqing, He, Xinyi, Jia, Shiru, Deng, Zixin, Rajakumar, Kumar, Ou, Hong-Yu
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
Large-Scale Identification of AbaR-Type Genomic Islands in Acinetobacter baumannii Reveals Diverse Insertion Sites and Clonal Lineage-Specific Antimicrobial Resistance Gene Profiles
Bi, Dexi, Xie, Ruting, Zheng, Jiayi, Yang, Huiqiong, Zhu, Xingchen, Ou, Hong-Yu, Wei, Qing
Published in Antimicrobial agents and chemotherapy (01.04.2019)
Published in Antimicrobial agents and chemotherapy (01.04.2019)
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Journal Article
Fusobacterium nucleatum promotes tumor progression in KRAS p.G12D-mutant colorectal cancer by binding to DHX15
Zhu, Huiyuan, Li, Man, Bi, Dexi, Yang, Huiqiong, Gao, Yaohui, Song, Feifei, Zheng, Jiayi, Xie, Ruting, Zhang, Youhua, Liu, Hu, Yan, Xuebing, Kong, Cheng, Zhu, Yefei, Xu, Qian, Wei, Qing, Qin, Huanlong
Published in Nature communications (24.02.2024)
Published in Nature communications (24.02.2024)
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Journal Article
Profiling Fusobacterium infection at high taxonomic resolution reveals lineage-specific correlations in colorectal cancer
Bi, Dexi, Zhu, Yin, Gao, Yaohui, Li, Hao, Zhu, Xingchen, Wei, Rong, Xie, Ruting, Cai, Chunmiao, Wei, Qing, Qin, Huanlong
Published in Nature communications (09.06.2022)
Published in Nature communications (09.06.2022)
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Journal Article
Toward automatic prediction of EGFR mutation status in pulmonary adenocarcinoma with 3D deep learning
Zhao, Wei, Yang, Jiancheng, Ni, Bingbing, Bi, Dexi, Sun, Yingli, Xu, Mengdi, Zhu, Xiaoxia, Li, Cheng, Jin, Liang, Gao, Pan, Wang, Peijun, Hua, Yanqing, Li, Ming
Published in Cancer medicine (Malden, MA) (01.07.2019)
Published in Cancer medicine (Malden, MA) (01.07.2019)
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Journal Article
SecReT4: a web-based bacterial type IV secretion system resource
Bi, Dexi, Liu, Linmeng, Tai, Cui, Deng, Zixin, Rajakumar, Kumar, Ou, Hong-Yu
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Integrin α5 subunit is required for the tumor supportive role of fibroblasts in colorectal adenocarcinoma and serves as a potential stroma prognostic marker
Lu, Ling, Xie, Ruting, Wei, Rong, Cai, Chunmiao, Bi, Dexi, Yin, Dingzi, Liu, Hu, Zheng, Jiayi, Zhang, Youhua, Song, Feifei, Gao, Yaohui, Tan, Linhua, Wei, Qing, Qin, Huanlong
Published in Molecular oncology (01.12.2019)
Published in Molecular oncology (01.12.2019)
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Journal Article
Fecal microbiota transplantation improves VPA-induced ASD mice by modulating the serotonergic and glutamatergic synapse signaling pathways
Wang, Jifeng, Cao, Yuan, Hou, Weiliang, Bi, Dexi, Yin, Fang, Gao, Yaohui, Huang, Dengfeng, Li, Yingying, Cao, Zhan, Yan, Yinmei, Zhao, Jianhua, Kong, Dewu, Lv, Xiaoqiong, Huang, Linsheng, Zhong, Hui, Wu, Chunyan, Chen, Qiyi, Yang, Rong, Wei, Qing, Qin, Huanlong
Published in Translational psychiatry (21.01.2023)
Published in Translational psychiatry (21.01.2023)
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Journal Article
Dehydroepiandrosterone supplementation and the impact of follicular fluid metabolome and cytokinome profiles in poor ovarian responders
Viardot-Foucault, Veronique, Zhou, Jieliang, Bi, Dexi, Takinami, Yoshihiko, Chan, Jerry K Y, Lee, Yie Hou
Published in Journal of ovarian research (02.06.2023)
Published in Journal of ovarian research (02.06.2023)
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Journal Article
ThioFinder: a web-based tool for the identification of thiopeptide gene clusters in DNA sequences
Li, Jing, Qu, Xudong, He, Xinyi, Duan, Lian, Wu, Guojun, Bi, Dexi, Deng, Zixin, Liu, Wen, Ou, Hong-Yu
Published in PloS one (24.09.2012)
Published in PloS one (24.09.2012)
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Journal Article
A newly developed PCR‐based method revealed distinct Fusobacterium nucleatum subspecies infection patterns in colorectal cancer
Bi, Dexi, Zhu, Yin, Gao, Yaohui, Li, Hao, Zhu, Xingchen, Wei, Rong, Xie, Ruting, Wei, Qing, Qin, Huanlong
Published in Microbial biotechnology (01.09.2021)
Published in Microbial biotechnology (01.09.2021)
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Journal Article
Comparative Analysis of AbaR-Type Genomic Islands Reveals Distinct Patterns of Genetic Features in Elements with Different Backbones
Bi, Dexi, Zheng, Jiayi, Xie, Ruting, Zhu, Yin, Wei, Rong, Ou, Hong-Yu, Wei, Qing, Qin, Huanlong
Published in mSphere (27.05.2020)
Published in mSphere (27.05.2020)
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Journal Article
Conjugative Transfer of Acute Hepatopancreatic Necrosis Disease-Causing pVA1-Type Plasmid Is Mediated by a Novel Self-Encoded Type IV Secretion System
Wang, Dehao, Wang, Liying, Bi, Dexi, Song, Jipeng, Wang, Guohao, Gao, Ye, Tang, Kathy F J, Meng, Fanzeng, Xie, Jingmei, Zhang, Fan, Huang, Jie, Li, Jianliang, Dong, Xuan
Published in Microbiology spectrum (26.10.2022)
Published in Microbiology spectrum (26.10.2022)
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Journal Article
Targeting integrin α5 in fibroblasts potentiates colorectal cancer response to PD-L1 blockade by affecting extracellular-matrix deposition
Lu, Ling, Gao, Yaohui, Huang, Dengfeng, Liu, Hu, Yin, Dingzi, Li, Man, Zheng, Jiayi, Wang, Shufei, Wu, Weijun, Zhao, Li, Bi, Dexi, Zhang, Youhua, Song, Feifei, Xie, Ruting, Wang, Jifeng, Qin, Huanlong, Wei, Qing
Published in Journal for immunotherapy of cancer (01.12.2023)
Published in Journal for immunotherapy of cancer (01.12.2023)
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Journal Article