Genome-Wide Analysis of RNA Secondary Structure
Bevilacqua, Philip C, Ritchey, Laura E, Su, Zhao, Assmann, Sarah M
Published in Annual review of genetics (23.11.2016)
Published in Annual review of genetics (23.11.2016)
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Journal Article
Template-directed RNA polymerization and enhanced ribozyme catalysis inside membraneless compartments formed by coacervates
Poudyal, Raghav R, Guth-Metzler, Rebecca M, Veenis, Andrew J, Frankel, Erica A, Keating, Christine D, Bevilacqua, Philip C
Published in Nature communications (30.01.2019)
Published in Nature communications (30.01.2019)
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Journal Article
Polyanion-Assisted Ribozyme Catalysis Inside Complex Coacervates
Poudyal, Raghav R, Keating, Christine D, Bevilacqua, Philip C
Published in ACS chemical biology (21.06.2019)
Published in ACS chemical biology (21.06.2019)
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Journal Article
Bioreactor droplets from liposome-stabilized all-aqueous emulsions
Dewey, Daniel C, Strulson, Christopher A, Cacace, David N, Bevilacqua, Philip C, Keating, Christine D
Published in Nature communications (20.08.2014)
Published in Nature communications (20.08.2014)
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Journal Article
Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis
Yamagami, Ryota, Bingaman, Jamie L, Frankel, Erica A, Bevilacqua, Philip C
Published in Nature communications (01.06.2018)
Published in Nature communications (01.06.2018)
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Journal Article
Regulation of innate immunity through RNA structure and the protein kinase PKR
Nallagatla, Subba Rao, Toroney, Rebecca, Bevilacqua, Philip C
Published in Current opinion in structural biology (01.02.2011)
Published in Current opinion in structural biology (01.02.2011)
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Journal Article
Determination of in vivo RNA structure in low-abundance transcripts
Kwok, Chun Kit, Ding, Yiliang, Tang, Yin, Assmann, Sarah M, Bevilacqua, Philip C
Published in Nature communications (16.12.2013)
Published in Nature communications (16.12.2013)
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Journal Article
Quantum Mechanical/Molecular Mechanical Free Energy Simulations of the Self-Cleavage Reaction in the Hepatitis Delta Virus Ribozyme
Ganguly, Abir, Thaplyal, Pallavi, Rosta, Edina, Bevilacqua, Philip C, Hammes-Schiffer, Sharon
Published in Journal of the American Chemical Society (29.01.2014)
Published in Journal of the American Chemical Society (29.01.2014)
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Journal Article
mRNA structural elements immediately upstream of the start codon dictate dependence upon eIF4A helicase activity
Waldron, Joseph A, Tack, David C, Ritchey, Laura E, Gillen, Sarah L, Wilczynska, Ania, Turro, Ernest, Bevilacqua, Philip C, Assmann, Sarah M, Bushell, Martin, Le Quesne, John
Published in Genome Biology (30.12.2019)
Published in Genome Biology (30.12.2019)
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Experimental demonstration and pan-structurome prediction of climate-associated riboSNitches in Arabidopsis
Ferrero-Serrano, Ángel, Sylvia, Megan M, Forstmeier, Peter C, Olson, Andrew J, Ware, Doreen, Bevilacqua, Philip C, Assmann, Sarah M
Published in Genome Biology (19.04.2022)
Published in Genome Biology (19.04.2022)
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Journal Article
Role of the Active Site Guanine in the glmS Ribozyme Self-Cleavage Mechanism: Quantum Mechanical/Molecular Mechanical Free Energy Simulations
Zhang, Sixue, Ganguly, Abir, Goyal, Puja, Bingaman, Jamie L, Bevilacqua, Philip C, Hammes-Schiffer, Sharon
Published in Journal of the American Chemical Society (21.01.2015)
Published in Journal of the American Chemical Society (21.01.2015)
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Journal Article
In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC)
Mitchell, 3rd, David, Renda, Andrew J, Douds, Catherine A, Babitzke, Paul, Assmann, Sarah M, Bevilacqua, Philip C
Published in RNA (Cambridge) (01.01.2019)
Published in RNA (Cambridge) (01.01.2019)
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Journal Article
Effect of Loop Sequence and Loop Length on the Intrinsic Fluorescence of G‑Quadruplexes
Kwok, Chun Kit, Sherlock, Madeline E, Bevilacqua, Philip C
Published in Biochemistry (Easton) (07.05.2013)
Published in Biochemistry (Easton) (07.05.2013)
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Journal Article
StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo
Tang, Yin, Bouvier, Emil, Kwok, Chun Kit, Ding, Yiliang, Nekrutenko, Anton, Bevilacqua, Philip C, Assmann, Sarah M
Published in Bioinformatics (15.08.2015)
Published in Bioinformatics (15.08.2015)
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