Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Bengtsson‐Palme, Johan, Ryberg, Martin, Hartmann, Martin, Branco, Sara, Wang, Zheng, Godhe, Anna, Wit, Pierre, Sánchez‐García, Marisol, Ebersberger, Ingo, Sousa, Filipe, Amend, Anthony, Jumpponen, Ari, Unterseher, Martin, Kristiansson, Erik, Abarenkov, Kessy, Bertrand, Yann J. K., Sanli, Kemal, Eriksson, K. Martin, Vik, Unni, Veldre, Vilmar, Nilsson, R. Henrik, Bunce, Michael
Published in Methods in ecology and evolution (01.10.2013)
Published in Methods in ecology and evolution (01.10.2013)
Get full text
Journal Article
Phylogenetic properties of 50 nuclear loci in Medicago (Leguminosae) generated using multiplexed sequence capture and next-generation sequencing
de Sousa, Filipe, Bertrand, Yann J K, Nylinder, Stephan, Oxelman, Bengt, Eriksson, Jonna S, Pfeil, Bernard E
Published in PloS one (17.10.2014)
Published in PloS one (17.10.2014)
Get full text
Journal Article
Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)
Eriksson, Jonna S, de Sousa, Filipe, Bertrand, Yann J K, Antonelli, Alexandre, Oxelman, Bengt, Pfeil, Bernard E
Published in BMC evolutionary biology (27.01.2018)
Published in BMC evolutionary biology (27.01.2018)
Get full text
Journal Article
Characterization and Dynamics of Repeatomes in Closely Related Species of Hieracium (Asteraceae) and Their Synthetic and Apomictic Hybrids
Zagorski, Danijela, Hartmann, Matthias, Bertrand, Yann J K, Paštová, Ladislava, Slavíková, Renata, Josefiová, Jiřina, Fehrer, Judith
Published in Frontiers in plant science (02.11.2020)
Published in Frontiers in plant science (02.11.2020)
Get full text
Journal Article
Evolutionary networks from RADseq loci point to hybrid origins of Medicago carstiensis and Medicago cretacea
Blanco‐Pastor, José Luis, Bertrand, Yann J. K., Liberal, Isabel María, Wei, Yanling, Brummer, E. Charles, Pfeil, Bernard E.
Published in American journal of botany (01.09.2019)
Published in American journal of botany (01.09.2019)
Get full text
Journal Article
Phylogenetic perspectives on diversification and character evolution in the species‐rich genus Erysimum (Erysimeae; Brassicaceae) based on a densely sampled ITS approach
Moazzeni, Hamid, Zarre, Shahin, Pfeil, Bernard E, Bertrand, Yann J. K, German, Dmitry A, Al‐Shehbaz, Ihsan A, Mummenhoff, Klaus, Oxelman, Bengt
Published in Botanical journal of the Linnean Society (01.08.2014)
Published in Botanical journal of the Linnean Society (01.08.2014)
Get full text
Journal Article
Molecular Evolution and Organization of Ribosomal DNA in the Hawkweed Tribe Hieraciinae (Cichorieae, Asteraceae)
Fehrer, Judith, Slavíková, Renáta, Paštová, Ladislava, Josefiová, Jiřina, Mráz, Patrik, Chrtek, Jindřich, Bertrand, Yann J K
Published in Frontiers in plant science (12.03.2021)
Published in Frontiers in plant science (12.03.2021)
Get full text
Journal Article
The use of chloroplast genome sequences to solve phylogenetic incongruences in Polystachya Hook (Orchidaceae Juss)
de Abreu, Narjara Lopes, Alves, Ruy José Válka, Cardoso, Sérgio Ricardo Sodré, Bertrand, Yann J K, Sousa, Filipe, Hall, Climbiê Ferreira, Pfeil, Bernard E, Antonelli, Alexandre
Published in PeerJ (San Francisco, CA) (15.06.2018)
Published in PeerJ (San Francisco, CA) (15.06.2018)
Get full text
Journal Article
Chloroplast genome and nuclear loci data for 71 Medicago species
Sousa, Filipe de, Bertrand, Yann J.K., Zizka, Alexander, Cangrén, Patrik, Oxelman, Bengt, Pfeil, Bernard E.
Published in Data in brief (01.06.2024)
Published in Data in brief (01.06.2024)
Get full text
Journal Article
Assignment of Homoeologs to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae)
Bertrand, Yann J. K., Scheen, Anne-Cathrine, Marcussen, Thomas, Pfeil, Bernard E., de Sousa, Filipe, Oxelman, Bengt
Published in Systematic biology (01.05.2015)
Published in Systematic biology (01.05.2015)
Get full text
Journal Article
Patterns of phylogenetic incongruence in Medicago found among six loci
de Sousa, Filipe, Bertrand, Yann J. K., Pfeil, Bernard E.
Published in Plant systematics and evolution (01.05.2016)
Published in Plant systematics and evolution (01.05.2016)
Get full text
Journal Article
A Multigene Phylogeny of Native American Hawkweeds (Hieracium Subgen. Chionoracium, Cichorieae, Asteraceae): Origin, Speciation Patterns, and Migration Routes
Fehrer, Judith, Bertrand, Yann J. K, Hartmann, Matthias, Caklová, Petra, Josefiová, Jiřina, Bräutigam, Siegfried, Chrtek, Jindřich
Published in Plants (Basel) (30.09.2022)
Published in Plants (Basel) (30.09.2022)
Get full text
Journal Article
Over a decade of atmospheric mercury monitoring at Amsterdam Island in the French Southern and Antarctic Lands
Magand, Olivier, Angot, Hélène, Bertrand, Yann, Sonke, Jeroen E, Laffont, Laure, Duperray, Solène, Collignon, Léa, Boulanger, Damien, Dommergue, Aurélien
Published in Scientific data (28.11.2023)
Published in Scientific data (28.11.2023)
Get full text
Journal Article
Seven-year monitoring of mercury in wet precipitation and atmosphere at the Amsterdam Island GMOS station
Tassone, Antonella, Magand, Olivier, Naccarato, Attilio, Martino, Maria, Amico, Domenico, Sprovieri, Francesca, Leuridan, Hippolyte, Bertrand, Yann, Ramonet, Michel, Pirrone, Nicola, Dommergue, Aurelien
Published in Heliyon (01.03.2023)
Published in Heliyon (01.03.2023)
Get full text
Journal Article
First dating of a recombination event in mammalian tick-borne flaviviruses
Bertrand, Yann, Töpel, Mats, Elväng, Annelie, Melik, Wessam, Johansson, Magnus
Published in PloS one (22.02.2012)
Published in PloS one (22.02.2012)
Get full text
Journal Article
A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation
Nilsson, R. Henrik, Veldre, Vilmar, Wang, Zheng, Eckart, Martin, Branco, Sara, Hartmann, Martin, Quince, Christopher, Godhe, Anna, Bertrand, Yann, Alfredsson, Johan F., Larsson, Karl-Henrik, Kõljalg, Urmas, Abarenkov, Kessy
Published in Mycoscience (2011)
Published in Mycoscience (2011)
Get full text
Journal Article