Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
Van Deynze, Allen, Zamora, Pablo, Delaux, Pierre-Marc, Heitmann, Cristobal, Jayaraman, Dhileepkumar, Rajasekar, Shanmugam, Graham, Danielle, Maeda, Junko, Gibson, Donald, Schwartz, Kevin D, Berry, Alison M, Bhatnagar, Srijak, Jospin, Guillaume, Darling, Aaron, Jeannotte, Richard, Lopez, Javier, Weimer, Bart C, Eisen, Jonathan A, Shapiro, Howard-Yana, Ané, Jean-Michel, Bennett, Alan B
Published in PLoS biology (07.08.2018)
Published in PLoS biology (07.08.2018)
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An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
Nguyen, Thanh Van, Wibberg, Daniel, Battenberg, Kai, Blom, Jochen, Vanden Heuvel, Brian, Berry, Alison M, Kalinowski, Jörn, Pawlowski, Katharina
Published in BMC genomics (12.10.2016)
Published in BMC genomics (12.10.2016)
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Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles
Gifford, Isaac, Battenberg, Kai, Vaniya, Arpana, Wilson, Alex, Tian, Li, Fiehn, Oliver, Berry, Alison M
Published in Frontiers in plant science (10.10.2018)
Published in Frontiers in plant science (10.10.2018)
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Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant
Persson, Tomas, Battenberg, Kai, Demina, Irina V, Vigil-Stenman, Theoden, Vanden Heuvel, Brian, Pujic, Petar, Facciotti, Marc T, Wilbanks, Elizabeth G, O'Brien, Anna, Fournier, Pascale, Cruz Hernandez, Maria Antonia, Mendoza Herrera, Alberto, Médigue, Claudine, Normand, Philippe, Pawlowski, Katharina, Berry, Alison M
Published in PloS one (28.05.2015)
Published in PloS one (28.05.2015)
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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
Normand, Philippe, Lapierre, Pascal, Tisa, Louis S, Gogarten, Johann Peter, Alloisio, Nicole, Bagnarol, Emilie, Bassi, Carla A, Berry, Alison M, Bickhart, Derek M, Choisne, Nathalie, Couloux, Arnaud, Cournoyer, Benoit, Cruveiller, Stephane, Daubin, Vincent, Demange, Nadia, Francino, Maria Pilar, Goltsman, Eugene, Huang, Ying, Kopp, Olga R, Labarre, Laurent, Lapidus, Alla, Lavire, Celine, Marechal, Joelle, Martinez, Michele, Mastronunzio, Juliana E, Mullin, Beth C, Niemann, James, Pujic, Pierre, Rawnsley, Tania, Rouy, Zoe, Schenowitz, Chantal, Sellstedt, Anita, Tavares, Fernando, Tomkins, Jeffrey P, Vallenet, David, Valverde, Claudio, Wall, Luis G, Wang, Ying, Medigue, Claudine, Benson, David R
Published in Genome Research (01.01.2007)
Published in Genome Research (01.01.2007)
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OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement
Battenberg, Kai, Lee, Ernest K, Chiu, Joanna C, Berry, Alison M, Potter, Daniel
Published in BMC bioinformatics (21.06.2017)
Published in BMC bioinformatics (21.06.2017)
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Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata
PERSSON, Tomas, BENSON, David R, SHUNSHENG HAN, HAN, James, WOYKE, Tanja, PITLUCK, Sam, PENNACCHIO, Len, NOLAN, Matt, IVANOVA, Natalia, PATI, Amrita, LAND, Miriam L, PAWLOWSKI, Katharina, NORMAND, Philippe, BERRY, Alison M, VANDEN HEUVEL, Brian, PUJIC, Petar, CHERTKOV, Olga, TESHIMA, Hazuki, BRUCE, David C, DETTER, Chris, TAPIA, Roxanne
Published in Journal of Bacteriology (01.12.2011)
Published in Journal of Bacteriology (01.12.2011)
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Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations
Barabote, Ravi D, Xie, Gary, Leu, David H, Normand, Philippe, Necsulea, Anamaria, Daubin, Vincent, Médigue, Claudine, Adney, William S, Xu, Xin Clare, Lapidus, Alla, Parales, Rebecca E, Detter, Chris, Pujic, Petar, Bruce, David, Lavire, Celine, Challacombe, Jean F, Brettin, Thomas S, Berry, Alison M
Published in Genome Research (01.06.2009)
Published in Genome Research (01.06.2009)
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Comparative Analysis of the Nodule Transcriptomes of Ceanothus thyrsiflorus (Rhamnaceae, Rosales) and Datisca glomerata (Datiscaceae, Cucurbitales)
Salgado, Marco G, van Velzen, Robin, Nguyen, Thanh Van, Battenberg, Kai, Berry, Alison M, Lundin, Daniel, Pawlowski, Katharina
Published in Frontiers in plant science (2018)
Published in Frontiers in plant science (2018)
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Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
Griesmann, Maximilian, Chang, Yue, Liu, Xin, Song, Yue, Haberer, Georg, Crook, Matthew B, Billault-Penneteau, Benjamin, Lauressergues, Dominique, Keller, Jean, Imanishi, Leandro, Roswanjaya, Yuda Purwana, Kohlen, Wouter, Pujic, Petar, Battenberg, Kai, Alloisio, Nicole, Liang, Yuhu, Hilhorst, Henk, Salgado, Marco G, Hocher, Valerie, Gherbi, Hassen, Svistoonoff, Sergio, Doyle, Jeff J, He, Shixu, Xu, Yan, Xu, Shanyun, Qu, Jing, Gao, Qiang, Fang, Xiaodong, Fu, Yuan, Normand, Philippe, Berry, Alison M, Wall, Luis G, Ané, Jean-Michel, Pawlowski, Katharina, Xu, Xun, Yang, Huanming, Spannagl, Manuel, Mayer, Klaus F X, Wong, Gane Ka-Shu, Parniske, Martin, Delaux, Pierre-Marc, Cheng, Shifeng
Published in Science (American Association for the Advancement of Science) (13.07.2018)
Published in Science (American Association for the Advancement of Science) (13.07.2018)
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Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders ‘Frankiales’ and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov
Sen, Arnab, Daubin, Vincent, Abrouk, Danis, Gifford, Isaac, Berry, Alison M, Normand, Philippe
Published in International journal of systematic and evolutionary microbiology (01.11.2014)
Published in International journal of systematic and evolutionary microbiology (01.11.2014)
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Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton
Pujic, Petar, Alloisio, Nicole, Fournier, Pascale, Roche, David, Sghaier, Haitham, Miotello, Guylaine, Armengaud, Jean, Berry, Alison M., Normand, Philippe
Published in Environmental microbiology (01.09.2019)
Published in Environmental microbiology (01.09.2019)
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The Influence of the Host Plant Is the Major Ecological Determinant of the Presence of Nitrogen-Fixing Root Nodule Symbiont Cluster II Frankia Species in Soil
Battenberg, Kai, Wren, Jannah A, Hillman, Janell, Edwards, Joseph, Huang, Liujing, Berry, Alison M
Published in Applied and environmental microbiology (01.01.2017)
Published in Applied and environmental microbiology (01.01.2017)
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Fragmentation of China's landscape by roads and urban areas
Li, Taian, Shilling, Fraser, Thorne, James, Li, Fengmin, Schott, Heidi, Boynton, Ryan, Berry, Alison M
Published in Landscape ecology (01.07.2010)
Published in Landscape ecology (01.07.2010)
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Proposal of 'Candidatus Frankia californiensis', the uncultured symbiont in nitrogen-fixing root nodules of a phylogenetically broad group of hosts endemic to western North America
Normand, Philippe, Nguyen, Thanh Van, Battenberg, Kai, Berry, Alison M, Heuvel, Brian Vanden, Fernandez, Maria P, Pawlowski, Katharina
Published in International journal of systematic and evolutionary microbiology (01.10.2017)
Published in International journal of systematic and evolutionary microbiology (01.10.2017)
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Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Medicago truncatula Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms
Battenberg, Kai, Potter, Daniel, Tabuloc, Christine A, Chiu, Joanna C, Berry, Alison M
Published in Frontiers in plant science (08.10.2018)
Published in Frontiers in plant science (08.10.2018)
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Frankia-Enriched Metagenomes from the Earliest Diverging Symbiotic Frankia Cluster: They Come in Teams
Nguyen, Thanh Van, Wibberg, Daniel, Vigil-Stenman, Theoden, Berckx, Fede, Battenberg, Kai, Demchenko, Kirill N, Blom, Jochen, Fernandez, Maria P, Yamanaka, Takashi, Berry, Alison M, Kalinowski, Jörn, Brachmann, Andreas, Pawlowski, Katharina
Published in Genome biology and evolution (01.08.2019)
Published in Genome biology and evolution (01.08.2019)
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