Network medicine for disease module identification and drug repurposing with the NeDRex platform
Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Bernett, Judith, Blumenthal, David B., Galindez, Gihanna, Salgado-Albarrán, Marisol, Lazareva, Olga, Flanagan, Keith, Cockell, Simon, Nogales, Cristian, Casas, Ana I., Schmidt, Harald H. H. W., Baumbach, Jan, Wipat, Anil, Kacprowski, Tim
Published in Nature communications (25.11.2021)
Published in Nature communications (25.11.2021)
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Cracking the black box of deep sequence-based protein–protein interaction prediction
Bernett, Judith, Blumenthal, David B, List, Markus
Published in Briefings in bioinformatics (22.01.2024)
Published in Briefings in bioinformatics (22.01.2024)
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Guiding questions to avoid data leakage in biological machine learning applications
Bernett, Judith, Blumenthal, David B., Grimm, Dominik G., Haselbeck, Florian, Joeres, Roman, Kalinina, Olga V., List, Markus
Published in Nature methods (01.08.2024)
Published in Nature methods (01.08.2024)
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Robust disease module mining via enumeration of diverse prize-collecting Steiner trees
Bernett, Judith, Krupke, Dominik, Sadegh, Sepideh, Baumbach, Jan, Fekete, Sándor P, Kacprowski, Tim, List, Markus, Blumenthal, David B
Published in Bioinformatics (04.03.2022)
Published in Bioinformatics (04.03.2022)
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