Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulator
Bergstrom, Erik N, Barnes, Mark, Martincorena, Iñigo, Alexandrov, Ludmil B
Published in BMC bioinformatics (07.10.2020)
Published in BMC bioinformatics (07.10.2020)
Get full text
Journal Article
Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator
Khandekar, Azhar, Vangara, Raviteja, Barnes, Mark, Díaz-Gay, Marcos, Abbasi, Ammal, Bergstrom, Erik N, Steele, Christopher D, Pillay, Nischalan, Alexandrov, Ludmil B
Published in BMC genomics (21.08.2023)
Published in BMC genomics (21.08.2023)
Get full text
Journal Article
Topography of mutational signatures in human cancer
Otlu, Burçak, Díaz-Gay, Marcos, Vermes, Ian, Bergstrom, Erik N., Zhivagui, Maria, Barnes, Mark, Alexandrov, Ludmil B.
Published in Cell reports (Cambridge) (29.08.2023)
Published in Cell reports (Cambridge) (29.08.2023)
Get full text
Journal Article
Same view, different lens: How intersectional identities reduce Americans’ stereotypes of threat regarding Arab and Black men
Bergstrom, Veronica N. Z., Cadieux, Jonathan, Thakkar, Drishti, Chasteen, Alison L.
Published in Group processes & intergroup relations (01.02.2024)
Published in Group processes & intergroup relations (01.02.2024)
Get full text
Journal Article
Time trends in T3 to T4 laryngeal cancer: A population-based long-term analysis
Reizenstein, Johan A., Holmberg, Lars, Bergqvist, Michael, Linder, Arne, Ekman, Simon, Lödén, Britta, Holmqvist, Marit, Hellström, Karin, von Beckerath, Mattias, Blomquist, Erik, Bergström, Stefan N.
Published in Head & neck (01.12.2014)
Published in Head & neck (01.12.2014)
Get full text
Journal Article
Examining clustered somatic mutations with SigProfilerClusters
Bergstrom, Erik N, Kundu, Mousumy, Tbeileh, Noura, Alexandrov, Ludmil B
Published in Bioinformatics (27.06.2022)
Published in Bioinformatics (27.06.2022)
Get full text
Journal Article
Mechanisms of APOBEC3 mutagenesis in human cancer cells
Petljak, Mia, Dananberg, Alexandra, Chu, Kevan, Bergstrom, Erik N., Striepen, Josefine, von Morgen, Patrick, Chen, Yanyang, Shah, Hina, Sale, Julian E., Alexandrov, Ludmil B., Stratton, Michael R., Maciejowski, John
Published in Nature (London) (28.07.2022)
Published in Nature (London) (28.07.2022)
Get full text
Journal Article
Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA
Bergstrom, Erik N., Luebeck, Jens, Petljak, Mia, Khandekar, Azhar, Barnes, Mark, Zhang, Tongwu, Steele, Christopher D., Pillay, Nischalan, Landi, Maria Teresa, Bafna, Vineet, Mischel, Paul S., Harris, Reuben S., Alexandrov, Ludmil B.
Published in Nature (London) (17.02.2022)
Published in Nature (London) (17.02.2022)
Get full text
Journal Article
Predicting pressure ulcer risk: a multisite study of the predictive validity of the Braden Scale
Bergstrom, N, Braden, B, Kemp, M, Champagne, M, Ruby, E
Published in Nursing research (New York) (01.09.1998)
Published in Nursing research (New York) (01.09.1998)
Get more information
Journal Article
Impact of age at diagnosis on prognosis and treatment in laryngeal cancer
Reizenstein, Johan A., Bergström, Stefan N., Holmberg, Lars, Linder, Arne, Ekman, Simon, Blomquist, Erik, Lödén, Britta, Holmqvist, Marit, Hellström, Karin, Nilsson, Christer O., Brattström, Daniel, Bergqvist, Michael
Published in Head & neck (01.08.2010)
Published in Head & neck (01.08.2010)
Get full text
Journal Article
Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence
Moody, Sarah, Senkin, Sergey, Islam, S. M. Ashiqul, Wang, Jingwei, Nasrollahzadeh, Dariush, Cortez Cardoso Penha, Ricardo, Fitzgerald, Stephen, Bergstrom, Erik N., Atkins, Joshua, He, Yudou, Khandekar, Azhar, Smith-Byrne, Karl, Carreira, Christine, Gaborieau, Valerie, Latimer, Calli, Thomas, Emily, Abnizova, Irina, Bucciarelli, Pauline E., Jones, David, Teague, Jon W., Abedi-Ardekani, Behnoush, Serra, Stefano, Scoazec, Jean-Yves, Saffar, Hiva, Azmoudeh-Ardalan, Farid, Sotoudeh, Masoud, Nikmanesh, Arash, Poustchi, Hossein, Niavarani, Ahmadreza, Gharavi, Samad, Eden, Michael, Richman, Paul, Campos, Lia S., Fitzgerald, Rebecca C., Ribeiro, Luis Felipe, Soares-Lima, Sheila Coelho, Dzamalala, Charles, Mmbaga, Blandina Theophil, Shibata, Tatsuhiro, Menya, Diana, Goldstein, Alisa M., Hu, Nan, Malekzadeh, Reza, Fazel, Abdolreza, McCormack, Valerie, McKay, James, Perdomo, Sandra, Scelo, Ghislaine, Chanudet, Estelle, Humphreys, Laura, Alexandrov, Ludmil B., Brennan, Paul, Stratton, Michael R.
Published in Nature genetics (01.11.2021)
Published in Nature genetics (01.11.2021)
Get full text
Journal Article
Deep Learning Artificial Intelligence Predicts Homologous Recombination Deficiency and Platinum Response From Histologic Slides
Bergstrom, Erik N, Abbasi, Ammal, Díaz-Gay, Marcos, Galland, Loïck, Ladoire, Sylvain, Lippman, Scott M, Alexandrov, Ludmil B
Published in Journal of clinical oncology (20.10.2024)
Published in Journal of clinical oncology (20.10.2024)
Get full text
Journal Article
Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor
Islam, S.M. Ashiqul, Díaz-Gay, Marcos, Wu, Yang, Barnes, Mark, Vangara, Raviteja, Bergstrom, Erik N., He, Yudou, Vella, Mike, Wang, Jingwei, Teague, Jon W., Clapham, Peter, Moody, Sarah, Senkin, Sergey, Li, Yun Rose, Riva, Laura, Zhang, Tongwu, Gruber, Andreas J., Steele, Christopher D., Otlu, Burçak, Khandekar, Azhar, Abbasi, Ammal, Humphreys, Laura, Syulyukina, Natalia, Brady, Samuel W., Alexandrov, Boian S., Pillay, Nischalan, Zhang, Jinghui, Adams, David J., Martincorena, Iñigo, Wedge, David C., Landi, Maria Teresa, Brennan, Paul, Stratton, Michael R., Rozen, Steven G., Alexandrov, Ludmil B.
Published in Cell genomics (09.11.2022)
Published in Cell genomics (09.11.2022)
Get full text
Journal Article
APOBEC3B regulates R-loops and promotes transcription-associated mutagenesis in cancer
McCann, Jennifer L., Cristini, Agnese, Law, Emily K., Lee, Seo Yun, Tellier, Michael, Carpenter, Michael A., Beghè, Chiara, Kim, Jae Jin, Sanchez, Anthony, Jarvis, Matthew C., Stefanovska, Bojana, Temiz, Nuri A., Bergstrom, Erik N., Salamango, Daniel J., Brown, Margaret R., Murphy, Shona, Alexandrov, Ludmil B., Miller, Kyle M., Gromak, Natalia, Harris, Reuben S.
Published in Nature genetics (01.10.2023)
Published in Nature genetics (01.10.2023)
Get full text
Journal Article