Efficient Algorithms for Langevin and DPD Dynamics
Goga, N, Rzepiela, A. J, de Vries, A. H, Marrink, S. J, Berendsen, H. J. C
Published in Journal of chemical theory and computation (09.10.2012)
Published in Journal of chemical theory and computation (09.10.2012)
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GROMACS: Fast, flexible, and free
Van Der Spoel, David, Lindahl, Erik, Hess, Berk, Groenhof, Gerrit, Mark, Alan E., Berendsen, Herman J. C.
Published in Journal of computational chemistry (01.12.2005)
Published in Journal of computational chemistry (01.12.2005)
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Experimental Multicenter and Multivendor Evaluation of the Performance of PET Radiomic Features Using 3-Dimensionally Printed Phantom Inserts
Pfaehler, Elisabeth, van Sluis, Joyce, Merema, Bram B J, van Ooijen, Peter, Berendsen, Ralph C M, van Velden, Floris H P, Boellaard, Ronald
Published in Journal of Nuclear Medicine (01.03.2020)
Published in Journal of Nuclear Medicine (01.03.2020)
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Marangoni flows induced by atmospheric-pressure plasma jets
Berendsen, C W J, van Veldhuizen, E M, Kroesen, G M W, Darhuber, A A
Published in Journal of physics. D, Applied physics (21.01.2015)
Published in Journal of physics. D, Applied physics (21.01.2015)
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Photoactivation of the Photoactive Yellow Protein: Why Photon Absorption Triggers a Trans-to-Cis Isomerization of the Chromophore in the Protein
Groenhof, Gerrit, Bouxin-Cademartory, Mathieu, Hess, Berk, de Visser, Sam P., Berendsen, Herman J. C., Olivucci, Massimo, Mark, Alan E., Robb, Michael A.
Published in Journal of the American Chemical Society (07.04.2004)
Published in Journal of the American Chemical Society (07.04.2004)
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Interobserver reproducibility of diffusion-weighted MRI in monitoring tumor response to neoadjuvant therapy in esophageal cancer
Kwee, Robert M, Dik, Alexander K, Sosef, Meindert N, Berendsen, Ralph C M, Sassen, Sander, Lammering, Guido, Clarijs, Ruud, Oostenbrug, Liekele E, Blom, Rachel L G M, Vliegen, Roy F A
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Dielectrophoretic deformation of thin liquid films induced by surface charge patterns on dielectric substrates
Berendsen, C. W. J, Kuijpers, C. J, Zeegers, J. C. H, Darhuber, A. A
Published in Soft matter (01.01.2013)
Published in Soft matter (01.01.2013)
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Essential dynamics of proteins
Amadei, A, Linssen, A B, Berendsen, H J
Published in Proteins, structure, function, and bioinformatics (01.12.1993)
Published in Proteins, structure, function, and bioinformatics (01.12.1993)
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High-Throughput Simulations Reveal Membrane-Mediated Effects of Alcohols on MscL Gating
Melo, Manuel N, Arnarez, Clément, Sikkema, Hendrik, Kumar, Neeraj, Walko, Martin, Berendsen, Herman J. C, Kocer, Armagan, Marrink, Siewert J, Ingólfsson, Helgi I
Published in Journal of the American Chemical Society (22.02.2017)
Published in Journal of the American Chemical Society (22.02.2017)
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Dynamic Conformations of Flavin Adenine Dinucleotide: Simulated Molecular Dynamics of the Flavin Cofactor Related to the Time-Resolved Fluorescence Characteristics
van den Berg, Petra A. W, Feenstra, K. Anton, Mark, Alan E, Berendsen, Herman J. C, Visser, Antonie J. W. G
Published in The journal of physical chemistry. B (29.08.2002)
Published in The journal of physical chemistry. B (29.08.2002)
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Journal Article
Micro patterning of cell and protein non-adhesive plasma polymerized coatings for biochip applications
Bouaidat, S, Berendsen, C, Thomsen, P, Petersen, S Guldager, Wolff, A, Jonsmann, J
Published in Lab on a chip (01.01.2004)
Published in Lab on a chip (01.01.2004)
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Journal Article
Calculation of the Redox Potential of the Protein Azurin and Some Mutants
van den Bosch, Marieke, Swart, Marcel, Snijders†, Jaap G, Berendsen, Herman J.C, Mark, Alan E, Oostenbrink, Chris, van Gunsteren, Wilfred F, Canters, Gerard W
Published in Chembiochem : a European journal of chemical biology (01.04.2005)
Published in Chembiochem : a European journal of chemical biology (01.04.2005)
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A white raven detected by imaging
Baur, L.H.B., Schreurs, W.M.J., van Leeuwen-Wintjes, H.R., Berendsen, C.L., Willems, R., Winkens, R.A.G., Vliegen, R., Theunissen, P., Gomez Garcia, E.B.
Published in Netherlands heart journal (01.07.2015)
Published in Netherlands heart journal (01.07.2015)
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Journal Article
Signal transduction in the photoactive yellow protein. I. Photon absorption and the isomerization of the chromophore
Groenhof, Gerrit, Lensink, Marc F., Berendsen, Herman J. C., Snijders, Jaap G., Mark, Alan E.
Published in Proteins, structure, function, and bioinformatics (01.08.2002)
Published in Proteins, structure, function, and bioinformatics (01.08.2002)
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Benchmark of Schemes for Multiscale Molecular Dynamics Simulations
Goga, N, Melo, M. N, Rzepiela, A. J, de Vries, A. H, Hadar, A, Marrink, S. J, Berendsen, H. J. C
Published in Journal of chemical theory and computation (14.04.2015)
Published in Journal of chemical theory and computation (14.04.2015)
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Journal Article
Stochastic Dynamics with Correct Sampling for Constrained Systems
Peters, E. A. J. F, Goga, N, Berendsen, H. J. C
Published in Journal of chemical theory and computation (14.10.2014)
Published in Journal of chemical theory and computation (14.10.2014)
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Journal Article
A Glimpse of the Holy Grail?
BERENDSEN, H. J. C
Published in Science (American Association for the Advancement of Science) (23.10.1998)
Published in Science (American Association for the Advancement of Science) (23.10.1998)
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