STAG2 mutations reshape the cohesin-structured spatial chromatin architecture to drive gene regulation in acute myeloid leukemia
Fischer, Alexander, Hernández-Rodríguez, Benjamín, Mulet-Lazaro, Roger, Nuetzel, Margit, Hölzl, Fabian, van Herk, Stanley, Kavelaars, François G., Stanewsky, Hanna, Ackermann, Ute, Niang, Amadou H., Diaz, Noelia, Reuschel, Edith, Strieder, Nicholas, Hernández-López, Inmaculada, Valk, Peter J.M., Vaquerizas, Juan M., Rehli, Michael, Delwel, Ruud, Gebhard, Claudia
Published in Cell reports (Cambridge) (27.08.2024)
Published in Cell reports (Cambridge) (27.08.2024)
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Journal Article
One-step Reprogramming of Human Fibroblasts into Oligodendrocyte-like Cells by SOX10, OLIG2, and NKX6.2
Chanoumidou, Konstantina, Hernández-Rodríguez, Benjamín, Windener, Farina, Thomas, Christian, Stehling, Martin, Mozafari, Sabah, Albrecht, Stefanie, Ottoboni, Linda, Antel, Jack, Kim, Kee-Pyo, Velychko, Sergiy, Cui, Qiao Ling, Xu, Yu Kang T., Martino, Gianvito, Winkler, Jürgen, Schöler, Hans R., Baron-Van Evercooren, Anne, Boespflug-Tanguy, Odile, Vaquerizas, Juan M., Ehrlich, Marc, Kuhlmann, Tanja
Published in Stem cell reports (13.04.2021)
Published in Stem cell reports (13.04.2021)
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Journal Article
Widening the Application Range of PLA‐Based Thermoplastic Materials through the Synthesis of PLA‐Polyether Block Copolymers: Thermal, Tensile, and Rheological Properties
Rodríguez Hernández, Benjamín, Lieske, Antje
Published in Macromolecular materials and engineering (01.03.2024)
Published in Macromolecular materials and engineering (01.03.2024)
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Journal Article
Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
Rhodes, James D.P., Feldmann, Angelika, Hernández-Rodríguez, Benjamín, Díaz, Noelia, Brown, Jill M., Fursova, Nadezda A., Blackledge, Neil P., Prathapan, Praveen, Dobrinic, Paula, Huseyin, Miles K., Szczurek, Aleksander, Kruse, Kai, Nasmyth, Kim A., Buckle, Veronica J., Vaquerizas, Juan M., Klose, Robert J.
Published in Cell reports (Cambridge) (21.01.2020)
Published in Cell reports (Cambridge) (21.01.2020)
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Journal Article
TADtool: visual parameter identification for TAD-calling algorithms
Kruse, Kai, Hug, Clemens B, Hernández-Rodríguez, Benjamín, Vaquerizas, Juan M
Published in Bioinformatics (Oxford, England) (15.10.2016)
Published in Bioinformatics (Oxford, England) (15.10.2016)
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Journal Article
Transcriptional regulation of endothelial cell behavior during sprouting angiogenesis
Jeong, Hyun-Woo, Hernández-Rodríguez, Benjamín, Kim, JungMo, Kim, Kee-Pyo, Enriquez-Gasca, Rocio, Yoon, Juyong, Adams, Susanne, Schöler, Hans R, Vaquerizas, Juan M, Adams, Ralf H
Published in Nature communications (28.09.2017)
Published in Nature communications (28.09.2017)
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Characterization of the Drosophila Group Ortholog to the Amino-Terminus of the Alpha-Thalassemia and Mental Retardation X-Linked (ATRX) Vertebrate Protein: e113182
Lopez-Falcon, Brenda, Meyer-Nava, Silvia, Hernandez-Rodriguez, Benjamin, Campos, Adam, Montero, Daniel, Rudino, Enrique, Vazquez, Martha, Zurita, Mario, Valadez-Graham, Viviana
Published in PloS one (01.12.2014)
Published in PloS one (01.12.2014)
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Characterization of the Drosophila group ortholog to the amino-terminus of the alpha-thalassemia and mental retardation X-Linked (ATRX) vertebrate protein
López-Falcón, Brenda, Meyer-Nava, Silvia, Hernández-Rodríguez, Benjamín, Campos, Adam, Montero, Daniel, Rudiño, Enrique, Vázquez, Martha, Zurita, Mario, Valadez-Graham, Viviana
Published in PloS one (01.12.2014)
Published in PloS one (01.12.2014)
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Journal Article
Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization
D’Orazio, Fabio M., Balwierz, Piotr J., González, Ada Jimenez, Guo, Yixuan, Hernández-Rodríguez, Benjamín, Wheatley, Lucy, Jasiulewicz, Aleksandra, Hadzhiev, Yavor, Vaquerizas, Juan M., Cairns, Bradley, Lenhard, Boris, Müller, Ferenc
Published in Developmental cell (08.03.2021)
Published in Developmental cell (08.03.2021)
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Journal Article
Germ plasm localisation dynamics mark distinct phases of transcriptional and post-transcriptional regulation control in primordial germ cells
Fabio Marco D'orazio, Balwierz, Piotr, Guo, Yixuan, Benjamin Hernandez Rodriguez, Jasiulewicz, Aleksandra, Vaquerizas, Juan Manuel, Cairns, Bradley, Lenhard, Boris, Mueller, Ferenc
Published in bioRxiv (14.01.2020)
Published in bioRxiv (14.01.2020)
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Paper
Cohesin disrupts polycomb-dependent chromosome interactions
Rhodes, James, Feldmann, Angelika, Hernandez-Rodriguez, Benjamin, Diaz, Noelia, Brown, Jill, Fursova, Nadezda, Blackledge, Neil, Prathapan, Praveen, Dobrinic, Paula, Miles, Huseyin, Szczurek, Aleksander, Kruse, Kai, Nasmyth, Kim, Buckle, Veronica, Vaquerizas, Juan M, Klose, Robert
Published in bioRxiv (30.03.2019)
Published in bioRxiv (30.03.2019)
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Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish
Baranasic, Damir, Hoertenhuber, Matthias, Balwierz, Piotr, Zehnder, Tobias, Abdul Kadir Mukarram, Nepal, Chirag, Varnai, Csilla, Hadzhiev, Yavor, Jimenez-Gonzalez, Ada, Li, Nan, Wragg, Joseph W, D'orazio, Fabio, Diaz, Noelia, Hernandez-Rodriguez, Benjamin, Chen, Zelin, Stoiber, Marcus, Dong, Michael, Stevens, Irene, Ross, Samuel E, Eagle, Anne, Ryan, Martin, Obasaju, Pelumi, Rastegar, Sepand, Mcgarvey, Alison C, Kopp, Wolfgang, Chambers, Emily, Wang, Dennis, Hyejeong Kim Kim, Acemel, Rafael D, Naranjo, Silvia, Lapinski, Maciej, Chong-Morrison, Vanessa, Mathavan, Sinnakaruppan, Peers, Bernard, Sauka-Spengler, Tatjana, Vingron, Martin, Carninci, Piero, Ohler, Uwe, Scott Allen Lacadie, Burgess, Shawn, Winata, Cecilia, Freek Van Eeden, Vaquerizas, Juan M, Gomez-Skarmeta, Jose Luis, Onichtchouk, Daria, Brown, Ben James, Bogdanovic, Ozren, Westerfield, Monte, Wardle, Fiona C, Daub, Carsten O, Lenhard, Boris, Mueller, Ferenc
Published in bioRxiv (10.08.2021)
Published in bioRxiv (10.08.2021)
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Paper
Correction: Characterization of the Drosophila Group Ortholog to the Amino-Terminus of the Alpha-Thalassemia and Mental Retardation X-Linked (ATRX) Vertebrate Protein
López-Falcón, Brenda, Meyer-Nava, Silvia, Hernández-Rodríguez, Benjamín, Campos, Adam, Montero, Daniel, Rudiño, Enrique, Vázquez, Martha, Zurita, Mario, Valadez-Graham, Viviana
Published in PloS one (10.02.2016)
Published in PloS one (10.02.2016)
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Journal Article
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Baranasic, Damir, Hörtenhuber, Matthias, Balwierz, Piotr J, Zehnder, Tobias, Mukarram, Abdul Kadir, Nepal, Chirag, Várnai, Csilla, Hadzhiev, Yavor, Jimenez-Gonzalez, Ada, Li, Nan, Wragg, Joseph, D'Orazio, Fabio M, Relic, Dorde, Pachkov, Mikhail, Díaz, Noelia, Hernández-Rodríguez, Benjamín, Chen, Zelin, Stoiber, Marcus, Dong, Michaël, Stevens, Irene, Ross, Samuel E, Eagle, Anne, Martin, Ryan, Obasaju, Oluwapelumi, Rastegar, Sepand, McGarvey, Alison C, Kopp, Wolfgang, Chambers, Emily, Wang, Dennis, Kim, Hyejeong R, Acemel, Rafael D, Naranjo, Silvia, Łapiński, Maciej, Chong, Vanessa, Mathavan, Sinnakaruppan, Peers, Bernard, Sauka-Spengler, Tatjana, Vingron, Martin, Carninci, Piero, Ohler, Uwe, Lacadie, Scott Allen, Burgess, Shawn M, Winata, Cecilia, van Eeden, Freek, Vaquerizas, Juan M, Gómez-Skarmeta, José Luis, Onichtchouk, Daria, Brown, Ben James, Bogdanovic, Ozren, van Nimwegen, Erik, Westerfield, Monte, Wardle, Fiona C, Daub, Carsten O, Lenhard, Boris, Müller, Ferenc
Published in Nature genetics (01.07.2022)
Published in Nature genetics (01.07.2022)
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Web Resource
Characterization of the Drosophila Group Ortholog to the Amino-Terminus of the Alpha-Thalassemia and Mental Retardation X-Linked
López-Falcón, Brenda, Meyer-Nava, Silvia, Hernández-Rodríguez, Benjamín, Campos, Adam, Montero, Daniel, Rudiño, Enrique, Vázquez, Martha, Zurita, Mario, Valadez-Graham, Viviana
Published in PloS one (01.12.2014)
Published in PloS one (01.12.2014)
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