Functional optimization of gene clusters by combinatorial design and assembly
Smanski, Michael J, Bhatia, Swapnil, Zhao, Dehua, Park, YongJin, B A Woodruff, Lauren, Giannoukos, Georgia, Ciulla, Dawn, Busby, Michele, Calderon, Johnathan, Nicol, Robert, Gordon, D Benjamin, Densmore, Douglas, Voigt, Christopher A
Published in Nature biotechnology (01.12.2014)
Published in Nature biotechnology (01.12.2014)
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Selection for constrained peptides that bind to a single target protein
King, Andrew M., Anderson, Daniel A., Glassey, Emerson, Segall-Shapiro, Thomas H., Zhang, Zhengan, Niquille, David L., Embree, Amanda C., Pratt, Katelin, Williams, Thomas L., Gordon, D. Benjamin, Voigt, Christopher A.
Published in Nature communications (03.11.2021)
Published in Nature communications (03.11.2021)
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Technological challenges and milestones for writing genomes
Ostrov, Nili, Beal, Jacob, Ellis, Tom, Gordon, D Benjamin, Karas, Bogumil J, Lee, Henry H, Lenaghan, Scott C, Schloss, Jeffery A, Stracquadanio, Giovanni, Trefzer, Axel, Bader, Joel S, Church, George M, Coelho, Cintia M, Efcavitch, J William, Güell, Marc, Mitchell, Leslie A, Nielsen, Alec A K, Peck, Bill, Smith, Alexander C, Stewart, Jr, C Neal, Tekotte, Hille
Published in Science (American Association for the Advancement of Science) (18.10.2019)
Published in Science (American Association for the Advancement of Science) (18.10.2019)
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Biosynthesis of the nitrogenase active-site cofactor precursor NifB-co in Saccharomyces cerevisiae
Burén, Stefan, Pratt, Katelin, Jiang, Xi, Guo, Yisong, Jimenez-Vicente, Emilio, Echavarri-Erasun, Carlos, Dean, Dennis R., Saaem, Ishtiaq, Gordon, D. Benjamin, Voigt, Christopher A., Rubio, Luis M.
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2019)
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Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development
Roberts, Thomas M, Shi, Yang, Qi, Hank H, Sarkissian, Madathia, Hu, Gang-Qing, Wang, Zhibin, Bhattacharjee, Arindam, Gordon, D. Benjamin, Gonzales, Michelle, Lan, Fei, Ongusaha, Pat P, Huarte, Maite, Yaghi, Nasser K, Lim, Huijun, Garcia, Benjamin A, Brizuela, Leonardo, Zhao, Keji
Published in Nature (London) (22.07.2010)
Published in Nature (London) (22.07.2010)
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An improved map of conserved regulatory sites for Saccharomyces cerevisiae
MacIsaac, Kenzie D, Wang, Ting, Gordon, D Benjamin, Gifford, David K, Stormo, Gary D, Fraenkel, Ernest
Published in BMC bioinformatics (07.03.2006)
Published in BMC bioinformatics (07.03.2006)
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Genetic circuit characterization and debugging using RNA‐seq
Gorochowski, Thomas E, Espah Borujeni, Amin, Park, Yongjin, Nielsen, Alec AK, Zhang, Jing, Der, Bryan S, Gordon, D Benjamin, Voigt, Christopher A
Published in Molecular systems biology (01.11.2017)
Published in Molecular systems biology (01.11.2017)
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Iterative algorithm-guided design of massive strain libraries, applied to itaconic acid production in yeast
Young, Eric M., Zhao, Zheng, Gielesen, Bianca E.M., Wu, Liang, Benjamin Gordon, D., Roubos, Johannes A., Voigt, Christopher A.
Published in Metabolic engineering (01.07.2018)
Published in Metabolic engineering (01.07.2018)
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Parallel engineering of environmental bacteria and performance over years under jungle-simulated conditions
Chemla, Yonatan, Dorfan, Yuval, Yannai, Adi, Meng, Dechuan, Cao, Paul, Glaven, Sarah, Gordon, D Benjamin, Elbaz, Johann, Voigt, Christopher A
Published in PloS one (14.12.2022)
Published in PloS one (14.12.2022)
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Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration
Woodruff, Lauren B A, Gorochowski, Thomas E, Roehner, Nicholas, Mikkelsen, Tarjei S, Densmore, Douglas, Gordon, D Benjamin, Nicol, Robert, Voigt, Christopher A
Published in Nucleic acids research (17.02.2017)
Published in Nucleic acids research (17.02.2017)
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Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing
Hannon, Gregory J, Hodges, Emily, Rooks, Michelle, Xuan, Zhenyu, Bhattacharjee, Arindam, Benjamin Gordon, D, Brizuela, Leonardo, Richard McCombie, W
Published in Nature protocols (01.06.2009)
Published in Nature protocols (01.06.2009)
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Control of type III protein secretion using a minimal genetic system
Song, Miryoung, Sukovich, David J., Ciccarelli, Luciano, Mayr, Julia, Fernandez-Rodriguez, Jesus, Mirsky, Ethan A., Tucker, Alex C., Gordon, D. Benjamin, Marlovits, Thomas C., Voigt, Christopher A.
Published in Nature communications (09.05.2017)
Published in Nature communications (09.05.2017)
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Global mass spectrometry based metabolomics profiling of erythrocytes infected with Plasmodium falciparum
Sana, Theodore R, Gordon, D Benjamin, Fischer, Steven M, Tichy, Shane E, Kitagawa, Norton, Lai, Cindy, Gosnell, William L, Chang, Sandra P
Published in PloS one (09.04.2013)
Published in PloS one (09.04.2013)
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Control of Pancreas and Liver Gene Expression by HNF Transcription Factors
Odom, Duncan T., Zizlsperger, Nora, Gordon, D. Benjamin, Bell, George W., Rinaldi, Nicola J., Murray, Heather L., Volkert, Tom L., Schreiber, Jörg, Rolfe, P. Alexander, Gifford, David K., Fraenkel, Ernest, Bell, Graeme I., Young, Richard A.
Published in Science (American Association for the Advancement of Science) (27.02.2004)
Published in Science (American Association for the Advancement of Science) (27.02.2004)
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Transcriptional Regulatory Networks in Saccharomyces cerevisiae
Lee, Tong Ihn, Rinaldi, Nicola J., Robert, François, Odom, Duncan T., Bar-Joseph, Ziv, Gerber, Georg K., Hannett, Nancy M., Harbison, Christopher T., Thompson, Craig M., Simon, Itamar, Zeitlinger, Julia, Jennings, Ezra G., Murray, Heather L., Gordon, D. Benjamin, Ren, Bing, Wyrick, John J., Tagne, Jean-Bosco, Volkert, Thomas L., Fraenkel, Ernest, Gifford, David K., Young, Richard A.
Published in Science (American Association for the Advancement of Science) (25.10.2002)
Published in Science (American Association for the Advancement of Science) (25.10.2002)
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Double Dutch: A Tool for Designing Combinatorial Libraries of Biological Systems
Roehner, Nicholas, Young, Eric M, Voigt, Christopher A, Gordon, D. Benjamin, Densmore, Douglas
Published in ACS synthetic biology (17.06.2016)
Published in ACS synthetic biology (17.06.2016)
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Computational discovery of gene modules and regulatory networks
Gifford, David K, Bar-Joseph, Ziv, Gerber, Georg K, Lee, Tong Ihn, Rinaldi, Nicola J, Yoo, Jane Y, Robert, François, Gordon, D Benjamin, Fraenkel, Ernest, Jaakkola, Tommi S, Young, Richard A
Published in Nature biotechnology (01.11.2003)
Published in Nature biotechnology (01.11.2003)
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Journal Article
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration
Woodruff, Lauren B A, Gorochowski, Thomas E, Roehner, Nicholas, Mikkelsen, Tarjei S, Densmore, Douglas, Gordon, D Benjamin, Nicol, Robert, Voigt, Christopher A
Published in Nucleic acids research (17.02.2017)
Published in Nucleic acids research (17.02.2017)
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Influence of acute and chronic streptozotocin-induced diabetes on the rat tendon extracellular matrix and mechanical properties
Volper, Brent D, Huynh, Richard T, Arthur, Kathryn A, Noone, Joshua, Gordon, Benjamin D, Zacherle, Emily W, Munoz, Eduardo, Sørensen, Mikkel A, Svensson, René B, Broderick, Tom L, Magnusson, S Peter, Howden, Reuben, Hale, Taben M, Carroll, Chad C
Published in American journal of physiology. Regulatory, integrative and comparative physiology (01.11.2015)
Published in American journal of physiology. Regulatory, integrative and comparative physiology (01.11.2015)
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