A benchmark of optimally folded protein structures using integer programming and the 3D-HP-SC model
Hattori, Leandro Takeshi, Gutoski, Matheus, Vargas Benítez, César Manuel, Nunes, Luiz Fernando, Lopes, Heitor Silvério
Published in Computational biology and chemistry (01.02.2020)
Published in Computational biology and chemistry (01.02.2020)
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Journal Article
A Novel Approach to Protein Folding Prediction based on Long Short-Term Memory Networks: A Preliminary Investigation and Analysis
Hattori, Leandro Takeshi, Benitez, Cesar Manuel Vargas, Gutoski, Matheus, Aquino, Nelson Marcelo Romero, Lopes, Heitor Silverio
Published in 2018 International Joint Conference on Neural Networks (IJCNN) (01.07.2018)
Published in 2018 International Joint Conference on Neural Networks (IJCNN) (01.07.2018)
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Conference Proceeding
PathMolD-AB: Spatiotemporal pathways of protein folding using parallel molecular dynamics with a coarse-grained model
Hattori, Leandro Takeshi, Pinheiro, Bruna Araujo, Frigori, Rafael Bertolini, Benítez, César Manuel Vargas, Lopes, Heitor Silvério
Published in Computational biology and chemistry (01.08.2020)
Published in Computational biology and chemistry (01.08.2020)
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Journal Article
A parallel genetic algorithm for protein folding prediction using the 3D-HP Side Chain model
Benitez, C.M.V., Lopes, H.S.
Published in 2009 IEEE Congress on Evolutionary Computation (01.05.2009)
Published in 2009 IEEE Congress on Evolutionary Computation (01.05.2009)
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Conference Proceeding
Reconfigurable Hardware Computing for Accelerating Protein Folding Simulations Using the Harmony Search Algorithm and the 3D-HP-Side Chain Model
Benítez, César Manuel Vargas, Scalabrin, Marlon, Lopes, Heitor Silvério, Lima, Carlos R. Erig
Published in Algorithms and Architectures for Parallel Processing (2011)
Published in Algorithms and Architectures for Parallel Processing (2011)
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Book Chapter
A deep bidirectional long short-term memory approach applied to the protein secondary structure prediction problem
Hattori, Leandro Takeshi, Vargas Benitez, Cesar Manuel, Lopes, Heitor Silverio
Published in 2017 IEEE Latin American Conference on Computational Intelligence (LA-CCI) (01.11.2017)
Published in 2017 IEEE Latin American Conference on Computational Intelligence (LA-CCI) (01.11.2017)
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Conference Proceeding