A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Zhang, Runxuan, Kuo, Richard, Coulter, Max, Calixto, Cristiane P G, Entizne, Juan Carlos, Guo, Wenbin, Marquez, Yamile, Milne, Linda, Riegler, Stefan, Matsui, Akihiro, Tanaka, Maho, Harvey, Sarah, Gao, Yubang, Wießner-Kroh, Theresa, Paniagua, Alejandro, Crespi, Martin, Denby, Katherine, Hur, Asa Ben, Huq, Enamul, Jantsch, Michael, Jarmolowski, Artur, Koester, Tino, Laubinger, Sascha, Li, Qingshun Quinn, Gu, Lianfeng, Seki, Motoaki, Staiger, Dorothee, Sunkar, Ramanjulu, Szweykowska-Kulinska, Zofia, Tu, Shih-Long, Wachter, Andreas, Waugh, Robbie, Xiong, Liming, Zhang, Xiao-Ning, Conesa, Ana, Reddy, Anireddy S N, Barta, Andrea, Kalyna, Maria, Brown, John W S
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Published in Genome Biology (07.07.2022)
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The spectrum of pre-mRNA splicing in autism
Engal, Eden, Zhang, Zhenwei, Geminder, Ophir, Jaffe-Herman, Shiri, Kay, Gillian, Ben-Hur, Asa, Salton, Maayan
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Published in Wiley interdisciplinary reviews. RNA (01.03.2024)
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Combining heterogeneous data sources for accurate functional annotation of proteins
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Published in BMC bioinformatics (28.02.2013)
Published in BMC bioinformatics (28.02.2013)
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Identification of an intronic splicing regulatory element involved in auto‐regulation of alternative splicing of SCL33 pre‐mRNA
Thomas, Julie, Palusa, Saiprasad G, Prasad, Kasavajhala V.S.K, Ali, Gul Shad, Surabhi, Giridara‐Kumar, Ben‐Hur, Asa, Abdel‐Ghany, Salah E, Reddy, Anireddy S.N
Published in The Plant journal : for cell and molecular biology (01.12.2012)
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A survey of the sorghum transcriptome using single-molecule long reads
Abdel-Ghany, Salah E, Hamilton, Michael, Jacobi, Jennifer L, Ngam, Peter, Devitt, Nicholas, Schilkey, Faye, Ben-Hur, Asa, Reddy, Anireddy S N
Published in Nature communications (24.06.2016)
Published in Nature communications (24.06.2016)
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Transcriptome Analysis of Drought-Resistant and Drought-Sensitive Sorghum ( Sorghum bicolor ) Genotypes in Response to PEG-Induced Drought Stress
Abdel-Ghany, Salah E, Ullah, Fahad, Ben-Hur, Asa, Reddy, Anireddy S N
Published in International journal of molecular sciences (24.01.2020)
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Support vector machines and kernels for computational biology
Ben-Hur, Asa, Ong, Cheng Soon, Sonnenburg, Sören, Schölkopf, Bernhard, Rätsch, Gunnar
Published in PLoS computational biology (01.10.2008)
Published in PLoS computational biology (01.10.2008)
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Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention
Ullah, Fahad, Jabeen, Saira, Salton, Maayan, Reddy, Anireddy S N, Ben-Hur, Asa
Published in Genome Biology (22.03.2023)
Published in Genome Biology (22.03.2023)
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Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching
Filichkin, Sergei A, Hamilton, Michael, Dharmawardhana, Palitha D, Singh, Sunil K, Sullivan, Christopher, Ben-Hur, Asa, Reddy, Anireddy S N, Jaiswal, Pankaj
Published in Frontiers in plant science (12.02.2018)
Published in Frontiers in plant science (12.02.2018)
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Exploring the relationship between intron retention and chromatin accessibility in plants
Ullah, Fahad, Hamilton, Michael, Reddy, Anireddy S N, Ben-Hur, Asa
Published in BMC genomics (05.01.2018)
Published in BMC genomics (05.01.2018)
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De novo design of synthetic prion domains
Toombs, James A., Petri, Michelina, Paul, Kacy R., Kan, Grace Y., Ben-Hur, Asa, Ross, Eric D.
Published in Proceedings of the National Academy of Sciences - PNAS (24.04.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (24.04.2012)
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Amino acid composition predicts prion activity
Afsar Minhas, Fayyaz Ul Amir, Ross, Eric D, Ben-Hur, Asa
Published in PLoS computational biology (01.04.2017)
Published in PLoS computational biology (01.04.2017)
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