Samplot: a platform for structural variant visual validation and automated filtering
Belyeu, Jonathan R, Chowdhury, Murad, Brown, Joseph, Pedersen, Brent S, Cormier, Michael J, Quinlan, Aaron R, Layer, Ryan M
Published in Genome Biology (25.05.2021)
Published in Genome Biology (25.05.2021)
Get full text
Journal Article
XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data
Berg, Jordan A, Belyeu, Jonathan R, Morgan, Jeffrey T, Ouyang, Yeyun, Bott, Alex J, Quinlan, Aaron R, Gertz, Jason, Rutter, Jared
Published in PLoS computational biology (01.01.2020)
Published in PLoS computational biology (01.01.2020)
Get full text
Journal Article
Identification of allele-specific KIV-2 repeats and impact on Lp(a) measurements for cardiovascular disease risk
Behera, Sairam, Belyeu, Jonathan R, Chen, Xiao, Paulin, Luis F, Nguyen, Ngoc Quynh H, Newman, Emma, Mahmoud, Medhat, Menon, Vipin K, Qi, Qibin, Joshi, Parag, Marcovina, Santica, Rossi, Massimiliano, Roller, Eric, Han, James, Onuchic, Vitor, Avery, Christy L, Ballantyne, Christie M, Rodriguez, Carlos J, Kaplan, Robert C, Muzny, Donna M, Metcalf, Ginger A, Gibbs, Richard A, Yu, Bing, Boerwinkle, Eric, Eberle, Michael A, Sedlazeck, Fritz J
Published in BMC medical genomics (24.10.2024)
Published in BMC medical genomics (24.10.2024)
Get full text
Journal Article
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, Jonathan R, Nicholas, Thomas J, Pedersen, Brent S, Sasani, Thomas A, Havrilla, James M, Kravitz, Stephanie N, Conway, Megan E, Lohman, Brian K, Quinlan, Aaron R, Layer, Ryan M
Published in Gigascience (01.07.2018)
Published in Gigascience (01.07.2018)
Get full text
Journal Article
De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families
Belyeu, Jonathan R., Brand, Harrison, Wang, Harold, Zhao, Xuefang, Pedersen, Brent S., Feusier, Julie, Gupta, Meenal, Nicholas, Thomas J., Brown, Joseph, Baird, Lisa, Devlin, Bernie, Sanders, Stephan J., Jorde, Lynn B., Talkowski, Michael E., Quinlan, Aaron R.
Published in American journal of human genetics (01.04.2021)
Published in American journal of human genetics (01.04.2021)
Get full text
Journal Article
Unfazed: parent-of-origin detection for large and small de novo variants
Belyeu, Jonathan R, Sasani, Thomas A, Pedersen, Brent S, Quinlan, Aaron R
Published in Bioinformatics (11.12.2021)
Published in Bioinformatics (11.12.2021)
Get full text
Journal Article
Identification of allele-specific KIV-2 repeats and impact on Lp
Behera, Sairam, Belyeu, Jonathan R, Chen, Xiao, Paulin, Luis F, Nguyen, Ngoc Quynh H, Newman, Emma, Mahmoud, Medhat, Menon, Vipin K, Qi, Qibin, Joshi, Parag, Marcovina, Santica, Rossi, Massimiliano, Roller, Eric, Han, James, Onuchic, Vitor, Avery, Christy L, Ballantyne, Christie M, Rodriguez, Carlos J, Kaplan, Robert C, Muzny, Donna M, Metcalf, Ginger A, Gibbs, Richard A, Yu, Bing, Boerwinkle, Eric, Eberle, Michael A, Sedlazeck, Fritz J
Published in BMC medical genomics (24.10.2024)
Published in BMC medical genomics (24.10.2024)
Get full text
Journal Article
XPRESSyourself: Enhancing, Standardizing, and Automating Ribosome Profiling Computational Analyses Yields Improved Insight into Data
Berg, Jordan A, Belyeu, Jonathan R, Morgan, Jeffrey T, Ouyang, Yeyun, Bott, Alex J, Quinlan, Aaron R, Gertz, Jason, Rutter, Jared
Published in bioRxiv (02.11.2019)
Published in bioRxiv (02.11.2019)
Get full text
Paper
Unfazed: parent-of-origin detection for large and small de novo variants
Belyeu, Jonathan R, Sasani, Thomas A, Pedersen, Brent S, Quinlan, Aaron R
Published in bioRxiv (03.02.2021)
Published in bioRxiv (03.02.2021)
Get full text
Paper
De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families
Belyeu, Jonathan R, Brand, Harrison, Wang, Harold, Zhao, Xuefang, Pedersen, Brent S, Feusier, Julie, Gupta, Meenal, Nicholas, Thomas J, Baird, Lisa, Devlin, Bernie, Sanders, Stephan J, Jorde, Lynn B, Talkowski, Michael E, Quinlan, Aaron R
Published in bioRxiv (08.10.2020)
Published in bioRxiv (08.10.2020)
Get full text
Paper
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, Jonathan R, Nicholas, Thomas J, Pedersen, Brent S, Sasani, Thomas A, Havrilla, James M, Kravitz, Stephanie N, Conway, Megan E, Lohman, Brian K, Quinlan, Aaron R, Layer, Ryan M
Published in bioRxiv (14.02.2018)
Published in bioRxiv (14.02.2018)
Get full text
Paper