Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc
Published in Nature plants (01.11.2018)
Published in Nature plants (01.11.2018)
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Oak genome reveals facets of long lifespan
Plomion, Christophe, Aury, Jean-Marc, Amselem, Joëlle, Leroy, Thibault, Murat, Florent, Duplessis, Sébastien, Faye, Sébastien, Francillonne, Nicolas, Labadie, Karine, Le Provost, Grégoire, Lesur, Isabelle, Bartholomé, Jérôme, Faivre-Rampant, Patricia, Kohler, Annegret, Leplé, Jean-Charles, Chantret, Nathalie, Chen, Jun, Diévart, Anne, Alaeitabar, Tina, Barbe, Valérie, Belser, Caroline, Bergès, Hélène, Bodénès, Catherine, Bogeat-Triboulot, Marie-Béatrice, Bouffaud, Marie-Lara, Brachi, Benjamin, Chancerel, Emilie, Cohen, David, Couloux, Arnaud, Da Silva, Corinne, Dossat, Carole, Ehrenmann, François, Gaspin, Christine, Grima-Pettenati, Jacqueline, Guichoux, Erwan, Hecker, Arnaud, Herrmann, Sylvie, Hugueney, Philippe, Hummel, Irène, Klopp, Christophe, Lalanne, Céline, Lascoux, Martin, Lasserre, Eric, Lemainque, Arnaud, Desprez-Loustau, Marie-Laure, Luyten, Isabelle, Madoui, Mohammed-Amin, Mangenot, Sophie, Marchal, Clémence, Maumus, Florian, Mercier, Jonathan, Michotey, Célia, Panaud, Olivier, Picault, Nathalie, Rouhier, Nicolas, Rué, Olivier, Rustenholz, Camille, Salin, Franck, Soler, Marçal, Tarkka, Mika, Velt, Amandine, Zanne, Amy E., Martin, Francis, Wincker, Patrick, Quesneville, Hadi, Kremer, Antoine, Salse, Jérôme
Published in Nature plants (01.07.2018)
Published in Nature plants (01.07.2018)
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Population genomics of apricots unravels domestication history and adaptive events
Groppi, Alexis, Liu, Shuo, Cornille, Amandine, Decroocq, Stéphane, Bui, Quynh Trang, Tricon, David, Cruaud, Corinne, Arribat, Sandrine, Belser, Caroline, Marande, William, Salse, Jérôme, Huneau, Cécile, Rodde, Nathalie, Rhalloussi, Wassim, Cauet, Stéphane, Istace, Benjamin, Denis, Erwan, Carrère, Sébastien, Audergon, Jean-Marc, Roch, Guillaume, Lambert, Patrick, Zhebentyayeva, Tetyana, Liu, Wei-Sheng, Bouchez, Olivier, Lopez-Roques, Céline, Serre, Rémy-Félix, Debuchy, Robert, Tran, Joseph, Wincker, Patrick, Chen, Xilong, Pétriacq, Pierre, Barre, Aurélien, Nikolski, Macha, Aury, Jean-Marc, Abbott, Albert Glenn, Giraud, Tatiana, Decroocq, Véronique
Published in Nature communications (25.06.2021)
Published in Nature communications (25.06.2021)
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Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
Belser, Caroline, Baurens, Franc-Christophe, Noel, Benjamin, Martin, Guillaume, Cruaud, Corinne, Istace, Benjamin, Yahiaoui, Nabila, Labadie, Karine, Hřibová, Eva, Doležel, Jaroslav, Lemainque, Arnaud, Wincker, Patrick, D’Hont, Angélique, Aury, Jean-Marc
Published in Communications biology (07.09.2021)
Published in Communications biology (07.09.2021)
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Diversity of the Pacific Ocean coral reef microbiome
Galand, Pierre E., Ruscheweyh, Hans-Joachim, Salazar, Guillem, Hochart, Corentin, Henry, Nicolas, Hume, Benjamin C. C., Oliveira, Pedro H., Perdereau, Aude, Labadie, Karine, Belser, Caroline, Boissin, Emilie, Romac, Sarah, Poulain, Julie, Bourdin, Guillaume, Iwankow, Guillaume, Moulin, Clémentine, Armstrong, Eric J., Paz-García, David A., Ziegler, Maren, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, Michel, Forcioli, Didier, Furla, Paola, Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Thomas, Olivier P., Troublé, Romain, Zoccola, Didier, Voolstra, Christian R., Thurber, Rebecca Vega, Sunagawa, Shinichi, Wincker, Patrick, Allemand, Denis, Planes, Serge
Published in Nature communications (01.06.2023)
Published in Nature communications (01.06.2023)
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Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Brandt, Miriam I., Pradillon, Florence, Trouche, Blandine, Henry, Nicolas, Liautard-Haag, Cathy, Cambon-Bonavita, Marie-Anne, Cueff-Gauchard, Valérie, Wincker, Patrick, Belser, Caroline, Poulain, Julie, Arnaud-Haond, Sophie, Zeppilli, Daniela
Published in Scientific reports (12.04.2021)
Published in Scientific reports (12.04.2021)
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Long-read assembly of the Brassica napus reference genome Darmor-bzh
Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc
Published in Gigascience (15.12.2020)
Published in Gigascience (15.12.2020)
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Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection
Canaguier, Aurélie, Guilbaud, Romane, Denis, Erwan, Magdelenat, Ghislaine, Belser, Caroline, Istace, Benjamin, Cruaud, Corinne, Wincker, Patrick, Le Paslier, Marie-Christine, Faivre-Rampant, Patricia, Barbe, Valérie
Published in BMC genomics (21.04.2022)
Published in BMC genomics (21.04.2022)
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Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean
Armstrong, Eric J., Lê-Hoang, Julie, Carradec, Quentin, Aury, Jean-Marc, Noel, Benjamin, Hume, Benjamin C. C., Voolstra, Christian R., Poulain, Julie, Belser, Caroline, Paz-García, David A., Cruaud, Corinne, Labadie, Karine, Da Silva, Corinne, Moulin, Clémentine, Boissin, Emilie, Bourdin, Guillaume, Iwankow, Guillaume, Romac, Sarah, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, Michel, Forcioli, Didier, Furla, Paola, Galand, Pierre E., Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sullivan, Matthew B., Sunagawa, Shinichi, Thomas, Olivier P., Troublé, Romain, Thurber, Rebecca Vega, Zoccola, Didier, Planes, Serge, Allemand, Denis, Wincker, Patrick
Published in Nature communications (01.06.2023)
Published in Nature communications (01.06.2023)
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BiSCoT: improving large eukaryotic genome assemblies with optical maps
Istace, Benjamin, Belser, Caroline, Aury, Jean-Marc
Published in PeerJ (San Francisco, CA) (05.11.2020)
Published in PeerJ (San Francisco, CA) (05.11.2020)
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Journal Article
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies
Plomion, Christophe, Aury, Jean-Marc, Amselem, Joëlle, Alaeitabar, Tina, Barbe, Valérie, Belser, Caroline, Bergès, Hélène, Bodénès, Catherine, Boudet, Nathalie, Boury, Christophe, Canaguier, Aurélie, Couloux, Arnaud, Da Silva, Corinne, Duplessis, Sébastien, Ehrenmann, François, Estrada-Mairey, Barbara, Fouteau, Stéphanie, Francillonne, Nicolas, Gaspin, Christine, Guichard, Cécile, Klopp, Christophe, Labadie, Karine, Lalanne, Céline, Le Clainche, Isabelle, Leplé, Jean-Charles, Le Provost, Grégoire, Leroy, Thibault, Lesur, Isabelle, Martin, Francis, Mercier, Jonathan, Michotey, Célia, Murat, Florent, Salin, Franck, Steinbach, Delphine, Faivre-Rampant, Patricia, Wincker, Patrick, Salse, Jérôme, Quesneville, Hadi, Kremer, Antoine
Published in Molecular ecology resources (01.01.2016)
Published in Molecular ecology resources (01.01.2016)
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Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats
Mota, Ana Paula Zotta, Koutsovoulos, Georgios D., Perfus-Barbeoch, Laetitia, Despot-Slade, Evelin, Labadie, Karine, Aury, Jean-Marc, Robbe-Sermesant, Karine, Bailly-Bechet, Marc, Belser, Caroline, Péré, Arthur, Rancurel, Corinne, Kozlowski, Djampa K., Hassanaly-Goulamhoussen, Rahim, Da Rocha, Martine, Noel, Benjamin, Meštrović, Nevenka, Wincker, Patrick, Danchin, Etienne G. J.
Published in Nature communications (05.02.2024)
Published in Nature communications (05.02.2024)
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Alberti, Adriana, Poulain, Julie, Engelen, Stefan, Labadie, Karine, Romac, Sarah, Ferrera, Isabel, Albini, Guillaume, Aury, Jean-Marc, Belser, Caroline, Bertrand, Alexis, Cruaud, Corinne, Da Silva, Corinne, Dossat, Carole, Gavory, Frédérick, Gas, Shahinaz, Guy, Julie, Haquelle, Maud, Jacoby, E'krame, Jaillon, Olivier, Lemainque, Arnaud, Pelletier, Eric, Samson, Gaëlle, Wessner, Mark, Acinas, Silvia G., Royo-Llonch, Marta, Cornejo-Castillo, Francisco M., Logares, Ramiro, Fernández-Gómez, Beatriz, Bowler, Chris, Cochrane, Guy, Amid, Clara, Hoopen, Petra Ten, De Vargas, Colomban, Grimsley, Nigel, Desgranges, Elodie, Kandels-Lewis, Stefanie, Ogata, Hiroyuki, Poulton, Nicole, Sieracki, Michael E., Stepanauskas, Ramunas, Sullivan, Matthew B., Brum, Jennifer R., Duhaime, Melissa B., Poulos, Bonnie T., Hurwitz, Bonnie L., Pesant, Stéphane, Karsenti, Eric, Wincker, Patrick
Published in Scientific data (01.08.2017)
Published in Scientific data (01.08.2017)
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Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa
Boutte, Julien, Maillet, Loeiz, Chaussepied, Thomas, Letort, Sébastien, Aury, Jean-Marc, Belser, Caroline, Boideau, Franz, Brunet, Anael, Coriton, Olivier, Deniot, Gwenaëlle, Falentin, Cyril, Huteau, Virginie, Lodé-Taburel, Maryse, Morice, Jérôme, Trotoux, Gwenn, Chèvre, Anne-Marie, Rousseau-Gueutin, Mathieu, Ferreira de Carvalho, Julie
Published in Frontiers in plant science (12.11.2020)
Published in Frontiers in plant science (12.11.2020)
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Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria and Archaea Along a Mediterranean—Atlantic Gradient
Trouche, Blandine, Brandt, Miriam I., Belser, Caroline, Orejas, Covadonga, Pesant, Stéphane, Poulain, Julie, Wincker, Patrick, Auguet, Jean-Christophe, Arnaud-Haond, Sophie, Maignien, Loïs
Published in Frontiers in microbiology (01.11.2021)
Published in Frontiers in microbiology (01.11.2021)
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Journal Article
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
Istace, Benjamin, Belser, Caroline, Falentin, Cyril, Labadie, Karine, Boideau, Franz, Deniot, Gwenaëlle, Maillet, Loeiz, Cruaud, Corinne, Bertrand, Laurie, Chèvre, Anne-Marie, Wincker, Patrick, Rousseau-Gueutin, Mathieu, Aury, Jean-Marc
Published in Biology (Basel, Switzerland) (30.07.2021)
Published in Biology (Basel, Switzerland) (30.07.2021)
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Journal Article
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
Belser, Caroline, Poulain, Julie, Labadie, Karine, Gavory, Frederick, Alberti, Adriana, Guy, Julie, Carradec, Quentin, Cruaud, Corinne, Da Silva, Corinne, Engelen, Stefan, Mielle, Paul, Perdereau, Aude, Samson, Gaelle, Gas, Shahinaz, Voolstra, Christian R., Galand, Pierre E., Flores, J. Michel, Hume, Benjamin C. C., Perna, Gabriela, Ziegler, Maren, Ruscheweyh, Hans-Joachim, Boissin, Emilie, Romac, Sarah, Bourdin, Guillaume, Iwankow, Guillaume, Moulin, Clémentine, Paz García, David A., Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Forcioli, Didier, Furla, Paola, Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sunagawa, Shinichi, Thomas, Olivier P., Troublé, Romain, Thurber, Rebecca Vega, Zoccola, Didier, Scarpelli, Claude, Jacoby, E’ Krame, Oliveira, Pedro H., Aury, Jean-Marc, Allemand, Denis, Planes, Serge, Wincker, Patrick
Published in Scientific data (01.06.2023)
Published in Scientific data (01.06.2023)
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Journal Article
Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans
Lang-Yona, Naama, Flores, J. Michel, Haviv, Rotem, Alberti, Adriana, Poulain, Julie, Belser, Caroline, Trainic, Miri, Gat, Daniella, Ruscheweyh, Hans-Joachim, Wincker, Patrick, Sunagawa, Shinichi, Rudich, Yinon, Koren, Ilan, Vardi, Assaf
Published in Communications earth & environment (20.05.2022)
Published in Communications earth & environment (20.05.2022)
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Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
Guérin, Nina, Ciccarella, Marta, Flamant, Elisa, Frémont, Paul, Mangenot, Sophie, Istace, Benjamin, Noel, Benjamin, Belser, Caroline, Bertrand, Laurie, Labadie, Karine, Cruaud, Corinne, Romac, Sarah, Bachy, Charles, Gachenot, Martin, Pelletier, Eric, Alberti, Adriana, Jaillon, Olivier, Wincker, Patrick, Aury, Jean-Marc, Carradec, Quentin
Published in Communications biology (16.09.2022)
Published in Communications biology (16.09.2022)
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Journal Article
Author Correction: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Mouton, Alice, Marins, Luísa S., Diedericks, Genevieve, Morselli, Marco, Salces-Ortiz, Judit, Natali, Chiara, Svardal, Hannes, De Pooter, Tim, Joris, Geert, Wood, Jonathan M. D., Herron, Katie E., Watts, Phillip C., Davey, Robert P., Fernández, José M., Alegria, Carla, Amorim, Isabel R., Aury, Jean-Marc, Baldrian, Petr, Baltrunaite, Laima, Barta, Endre, BedHom, Bertrand, Binzer-Panchal, Mahesh, Bista, Iliana, Borges, Paulo A. V., Dias, Guilherme Borges, Buena-Atienza, Elena, Chiara, Matteo, Cruz, Fernando, De Biase, Alessio, del Campo, Javier, Derks, Martijn F. L., Duprat, Simone, Flot, Jean-François, Forni, Giobbe, Fosso, Bruno, Fournier-Chambrillon, Christine, Garg, Shilpa, Gissi, Carmela, Giupponi, Luca, Grüning, Björn, Guerin, Thomas, Hahn, Christoph, Harrison, Peter W., Heintz, Julia, Howe, Kerstin, Hughes, Graham M., Istace, Benjamin, Janžekovič, Franc, Jonsson, Zophonias O., Koskimäki, Janne J., Lähteenaro, Meri, Lantz, Henrik, Lavrinienko, Anton, Madsen, Ole, Magdelenat, Ghislaine, Manousaki, Tereza, Mappes, Tapio, Redondo, Gemma I. Martinez, Mendes, Sofia L., Montagna, Matteo, Moreno, Joao, Mosbech, Mai-Britt, Moura, Mónica, Musilova, Zuzana, Myers, Eugene, Nater, Alexander, Nicholson, Pamela, Niell, Manuel, Nijland, Reindert, Noel, Benjamin, Olsen, Remi-Andre, Ometto, Lino, Palinauskas, Vaidas, Palsson, Snaebjorn, Panibe, Jerome P., Pavlek, Martina, Poulakakis, Nikos, Resendes, Roberto, Riesgo, Ana, Soares, Andre E. R., Romeiras, Maria M., Roxo, Guilherme, Rüber, Lukas, Ruiz-Lopez, Maria Jose, Spada, Alberto, Stefanovic, Milomir, Steger, Viktor, Stiller, Josefin, Stöck, Matthias, Trindade, Helena, Vacherie, Benoit, Vargas-Chavez, Carlos, Vella, Noel, Vella, Adriana, Villa, Sara, Wincker, Patrick, Winkler, Sylke, Ciofi, Claudio, Waterhouse, Robert M., Mazzoni, Camila J.
Published in Npj Biodiversity (15.10.2024)
Published in Npj Biodiversity (15.10.2024)
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