Validation of genomic and transcriptomic models of homologous recombination deficiency in a real-world pan-cancer cohort
Leibowitz, Benjamin D, Dougherty, Bonnie V, Bell, Joshua S K, Kapilivsky, Joshuah, Michuda, Jackson, Sedgewick, Andrew J, Munson, Wesley A, Chandra, Tushar A, Dry, Jonathan R, Beaubier, Nike, Igartua, Catherine, Taxter, Timothy
Published in BMC cancer (28.05.2022)
Published in BMC cancer (28.05.2022)
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Journal Article
Molecular profiling of a real-world breast cancer cohort with genetically inferred ancestries reveals actionable tumor biology differences between European ancestry and African ancestry patient populations
Miyashita, Minoru, Bell, Joshua S K, Wenric, Stephane, Karaesmen, Ezgi, Rhead, Brooke, Kase, Matthew, Kaneva, Kristiyana, De La Vega, Francisco M, Zheng, Yonglan, Yoshimatsu, Toshio F, Khramtsova, Galina, Liu, Fang, Zhao, Fangyuan, Howard, Frederick M, Nanda, Rita, Beaubier, Nike, White, Kevin P, Huo, Dezheng, Olopade, Olufunmilayo I
Published in Breast cancer research : BCR (25.05.2023)
Published in Breast cancer research : BCR (25.05.2023)
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Journal Article
Targeting HER2/HER3 co‐mutations in metastatic breast cancer: Case reports of exceptional responders to trastuzumab and pertuzumab therapy
Blas, Page E., Rodriguez, Esther San Roman, Williams, Heather L., Levin, Maren K., Bell, Joshua S. K., Pierobon, Mariaelena, Barrett, Alexander S., Petricoin, Emanuel F., O'Shaughnessy, Joyce A.
Published in Cancer reports (01.03.2024)
Published in Cancer reports (01.03.2024)
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Journal Article
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
Phillips-Cremins, Jennifer E., Sauria, Michael E.G., Sanyal, Amartya, Gerasimova, Tatiana I., Lajoie, Bryan R., Bell, Joshua S.K., Ong, Chin-Tong, Hookway, Tracy A., Guo, Changying, Sun, Yuhua, Bland, Michael J., Wagstaff, William, Dalton, Stephen, McDevitt, Todd C., Sen, Ranjan, Dekker, Job, Taylor, James, Corces, Victor G.
Published in Cell (06.06.2013)
Published in Cell (06.06.2013)
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Journal Article
Racial Disparities in Pathological Complete Response Among Patients Receiving Neoadjuvant Chemotherapy for Early-Stage Breast Cancer
Zhao, Fangyuan, Miyashita, Minoru, Hattori, Masaya, Yoshimatsu, Toshio, Howard, Frederick, Kaneva, Kristiyana, Jones, Ryan, Bell, Joshua S K, Fleming, Gini F, Jaskowiak, Nora, Nanda, Rita, Zheng, Yonglan, Huo, Dezheng, Olopade, Olufunmilayo I
Published in JAMA network open (01.03.2023)
Published in JAMA network open (01.03.2023)
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Journal Article
Epigenetically heterogeneous tumor cells direct collective invasion through filopodia-driven fibronectin micropatterning
Summerbell, Emily R, Mouw, Janna K, Bell, Joshua S K, Knippler, Christina M, Pedro, Brian, Arnst, Jamie L, Khatib, Tala O, Commander, Rachel, Barwick, Benjamin G, Konen, Jessica, Dwivedi, Bhakti, Seby, Sandra, Kowalski, Jeanne, Vertino, Paula M, Marcus, Adam I
Published in Science advances (01.07.2020)
Published in Science advances (01.07.2020)
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Journal Article
Real-world Evidence of Diagnostic Testing and Treatment Patterns in US Patients With Breast Cancer With Implications for Treatment Biomarkers From RNA Sequencing Data
Fernandes, Louis E., Epstein, Caroline G., Bobe, Alexandria M., Bell, Joshua S.K., Stumpe, Martin C., Salazar, Michael E., Salahudeen, Ameen A., Pe Benito, Ruth A., McCarter, Calvin, Leibowitz, Benjamin D., Kase, Matthew, Igartua, Catherine, Huether, Robert, Hafez, Ashraf, Beaubier, Nike, Axelson, Michael D., Pegram, Mark D., Sammons, Sarah L., O’Shaughnessy, Joyce A., Palmer, Gary A.
Published in Clinical breast cancer (01.08.2021)
Published in Clinical breast cancer (01.08.2021)
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Journal Article
Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds
Horton, John R., Liu, Xu, Gale, Molly, Wu, Lizhen, Shanks, John R., Zhang, Xing, Webber, Philip J., Bell, Joshua S.K., Kales, Stephen C., Mott, Bryan T., Rai, Ganesha, Jansen, Daniel J., Henderson, Mark J., Urban, Daniel J., Hall, Matthew D., Simeonov, Anton, Maloney, David J., Johns, Margaret A., Fu, Haian, Jadhav, Ajit, Vertino, Paula M., Yan, Qin, Cheng, Xiaodong
Published in Cell chemical biology (21.07.2016)
Published in Cell chemical biology (21.07.2016)
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Journal Article
Transcriptome-based cancer type prediction for tumors of unknown origin
Michuda, Jack, Igartua, Catherine, Taxter, Tim, Bell, Joshua SK, Pelossof, Raphael, White, Kevin
Published in Journal of clinical oncology (20.05.2019)
Published in Journal of clinical oncology (20.05.2019)
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Journal Article
Abstract 3908: Universal genetic and transcriptomic concordance metrics to validate patient-derived tumor organoid models
Mapes, Brandon L., Bell, Joshua SK, Langer, Lee F., Huether, Robert, Igartua, Catherine, Sanchez-Freire, Veronica, Tell, Robert, Borgia, Jeffrey A., Masood, Ashiq, Salahudeen, Ameen A.
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Abstract PD7-06: Unstable mutational profile and heterogeneity of residual breast tumor following neoadjuvant therapy from comprehensive genomic and transcriptomic sequencing
Miyashita, Minoru, Hattori, Masaya, Zheng, Yonglan, Yoshimatsu, Toshio, Bell, Joshua SK, Rajagopal, Padma Sheila, Woodard, Anna, Reynier, Jean Baptiste, Sveen, Elisabeth, Khramtsova, Galina, Liu, Fang, Ibraheem, Abiola, Fleming, Gini, Jaskowiak, Nora, Nanda, Rita, Leibowitz, Benjamin, Beaubier, Nike, White, Kevin, Huo, Dezheng, Olopade, Olufunmilayo I
Published in Cancer research (Chicago, Ill.) (15.02.2021)
Published in Cancer research (Chicago, Ill.) (15.02.2021)
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Journal Article
Abstract SS1-04: Comprehensive genomic and transcriptomic profiling of molecular subtypes reveal ancestral differences in the activity of signaling pathways between patients with African and European ancestry
Miyashita, Minoru, Bell, Joshua SK, Zheng, Yonglan, Yoshimatsu, Toshio, Rajagopal, Padma Sheila, Woodard, Anna, Reynier, Jean Baptiste, Sveen, Elisabeth, Khramtsova, Galina, Liu, Fang, Ibraheem, Abiola, Fleming, Gini, Jaskowiak, Nora, Nanda, Rita, Leibowitz, Benjamin, Beaubier, Nike, White, Kevin, Huo, Dezheng, Olopade, Olufunmilayo I
Published in Cancer research (Chicago, Ill.) (15.02.2021)
Published in Cancer research (Chicago, Ill.) (15.02.2021)
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Journal Article
Abstract PR08: GC skew defines distinct RNA polymerase pause sites in CpG island promoters
Bell, Joshua SK, Kellner, Wendy A., Vertino, Paula M.
Published in Cancer research (Chicago, Ill.) (15.01.2016)
Published in Cancer research (Chicago, Ill.) (15.01.2016)
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Journal Article
Architectural protein subclasses shape 3-D organization of genomes during lineage commitment
Phillips-Cremins, Jennifer E., Sauria, Michael E. G., Sanyal, Amartya, Gerasimova, Tatiana I., Lajoie, Bryan R., Bell, Joshua S. K., Ong, Chin-Tong, Hookway, Tracy A., Guo, Changying, Sun, Yuhua, Bland, Michael J., Wagstaff, William, Dalton, Stephen, McDevitt, Todd C., Sen, Ranjan, Dekker, Job, Taylor, James, Corces, Victor G.
Published in Cell (23.05.2013)
Published in Cell (23.05.2013)
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