Engineering microbial consortia for controllable outputs
Lindemann, Stephen R, Bernstein, Hans C, Song, Hyun-Seob, Fredrickson, Jim K, Fields, Matthew W, Shou, Wenying, Johnson, David R, Beliaev, Alexander S
Published in The ISME Journal (01.09.2016)
Published in The ISME Journal (01.09.2016)
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Structure of a bacterial cell surface decaheme electron conduit
Clarke, Thomas A, Edwards, Marcus J, Gates, Andrew J, Hall, Andrea, White, Gaye F, Bradley, Justin, Reardon, Catherine L, Shi, Liang, Beliaev, Alexander S, Marshall, Matthew J, Wang, Zheming, Watmough, Nicholas J, Fredrickson, James K, Zachara, John M, Butt, Julea N, Richardson, David J
Published in Proceedings of the National Academy of Sciences - PNAS (07.06.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (07.06.2011)
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Engineering Limonene and Bisabolene Production in Wild Type and a Glycogen-Deficient Mutant of Synechococcus sp. PCC 7002
Davies, Fiona K, Work, Victoria H, Beliaev, Alexander S, Posewitz, Matthew C
Published in Frontiers in bioengineering and biotechnology (19.06.2014)
Published in Frontiers in bioengineering and biotechnology (19.06.2014)
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Tripogon loliiformis tolerates rapid desiccation after metabolic and transcriptional priming during initial drying
Okemo, Pauline A, Njaci, Isaac, Kim, Young-Mo, McClure, Ryan S, Peterson, Matthew J, Beliaev, Alexander S, Hixson, Kim K, Mundree, Sagadevan, Williams, Brett
Published in Scientific reports (23.11.2023)
Published in Scientific reports (23.11.2023)
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Current Production and Metal Oxide Reduction by Shewanella oneidensis MR-1 Wild Type and Mutants
Bretschger, Orianna, Obraztsova, Anna, Sturm, Carter A, Chang, In Seop, Gorby, Yuri A, Reed, Samantha B, Culley, David E, Reardon, Catherine L, Barua, Soumitra, Romine, Margaret F, Zhou, Jizhong, Beliaev, Alexander S, Bouhenni, Rachida, Saffarini, Daad, Mansfeld, Florian, Kim, Byung-Hong, Fredrickson, James K, Nealson, Kenneth H
Published in Applied and Environmental Microbiology (01.11.2007)
Published in Applied and Environmental Microbiology (01.11.2007)
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Pyruvate and Lactate Metabolism by Shewanella oneidensis MR-1 under Fermentation, Oxygen Limitation, and Fumarate Respiration Conditions
PINCHUK, Grigoriy E, GEYDEBREKHT, Oleg V, HILL, Eric A, REED, Jennifer L, KONOPKA, Allan E, BELIAEV, Alexander S, FREDRICKSON, Jim K
Published in Applied and Environmental Microbiology (01.12.2011)
Published in Applied and Environmental Microbiology (01.12.2011)
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Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142
Vu, Trang T, Stolyar, Sergey M, Pinchuk, Grigoriy E, Hill, Eric A, Kucek, Leo A, Brown, Roslyn N, Lipton, Mary S, Osterman, Andrei, Fredrickson, Jim K, Konopka, Allan E, Beliaev, Alexander S, Reed, Jennifer L
Published in PLoS computational biology (01.04.2012)
Published in PLoS computational biology (01.04.2012)
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Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization
Pinchuk, Grigory E, Rodionov, Dmitry A, Yang, Chen, Li, Xiaoqing, Osterman, Andrei L, Dervyn, Etienne, Geydebrekht, Oleg V, Reed, Samantha B, Romine, Margaret F, Collart, Frank R, Scott, James H, Fredrickson, Jim K, Beliaev, Alexander S
Published in Proceedings of the National Academy of Sciences - PNAS (24.02.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (24.02.2009)
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The Role of Shewanella oneidensis MR-1 Outer Surface Structures in Extracellular Electron Transfer
Bouhenni, Rachida A., Vora, Gary J., Biffinger, Justin C., Shirodkar, Sheetal, Brockman, Ken, Ray, Ricky, Wu, Peter, Johnson, Brandy J., Biddle, Eulandria M., Marshall, Matthew J., Fitzgerald, Lisa A., Little, Brenda J., Fredrickson, Jim K., Beliaev, Alexander S., Ringeisen, Bradley R., Saffarini, Daad A.
Published in Electroanalysis (New York, N.Y.) (01.04.2010)
Published in Electroanalysis (New York, N.Y.) (01.04.2010)
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c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis
Marshall, Matthew J, Beliaev, Alexander S, Dohnalkova, Alice C, Kennedy, David W, Shi, Liang, Wang, Zheming, Boyanov, Maxim I, Lai, Barry, Kemner, Kenneth M, McLean, Jeffrey S, Reed, Samantha B, Culley, David E, Bailey, Vanessa L, Simonson, Cody J, Saffarini, Daad A, Romine, Margaret F, Zachara, John M, Fredrickson, James K
Published in PLoS biology (01.08.2006)
Published in PLoS biology (01.08.2006)
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Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth
Bernstein, Hans C, McClure, Ryan S, Hill, Eric A, Markillie, Lye Meng, Chrisler, William B, Romine, Margie F, McDermott, Jason E, Posewitz, Matthew C, Bryant, Donald A, Konopka, Allan E, Fredrickson, James K, Beliaev, Alexander S
Published in mBio (26.07.2016)
Published in mBio (26.07.2016)
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Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation
Pinchuk, Grigoriy E, Hill, Eric A, Geydebrekht, Oleg V, De Ingeniis, Jessica, Zhang, Xiaolin, Osterman, Andrei, Scott, James H, Reed, Samantha B, Romine, Margaret F, Konopka, Allan E, Beliaev, Alexander S, Fredrickson, Jim K, Reed, Jennifer L
Published in PLoS computational biology (24.06.2010)
Published in PLoS computational biology (24.06.2010)
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Direct Involvement of Type II Secretion System in Extracellular Translocation of Shewanella oneidensis Outer Membrane Cytochromes MtrC and OmcA
Shi, Liang, Deng, Shuang, Marshall, Matthew J, Wang, Zheming, Kennedy, David W, Dohnalkova, Alice C, Mottaz, Heather M, Hill, Eric A, Gorby, Yuri A, Beliaev, Alexander S, Richardson, David J, Zachara, John M, Fredrickson, James K
Published in Journal of Bacteriology (01.08.2008)
Published in Journal of Bacteriology (01.08.2008)
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Isolation of a High-Affinity Functional Protein Complex between OmcA and MtrC: Two Outer Membrane Decaheme c-Type Cytochromes of Shewanella oneidensis MR-1
Shi, Liang, Chen, Baowei, Wang, Zheming, Elias, Dwayne A, Mayer, M Uljana, Gorby, Yuri A, Ni, Shuison, Lower, Brian H, Kennedy, David W, Wunschel, David S, Mottaz, Heather M, Marshall, Matthew J, Hill, Eric A, Beliaev, Alexander S, Zachara, John M, Fredrickson, James K, Squier, Thomas C
Published in Journal of Bacteriology (01.07.2006)
Published in Journal of Bacteriology (01.07.2006)
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Utilization of DNA as a Sole Source of Phosphorus, Carbon, and Energy by Shewanella spp.: Ecological and Physiological Implications for Dissimilatory Metal Reduction
Pinchuk, Grigoriy E, Ammons, Christine, Culley, David E, Li, Shu-Mei W, McLean, Jeff S, Romine, Margaret F, Nealson, Kenneth H, Fredrickson, Jim K, Beliaev, Alexander S
Published in Applied and Environmental Microbiology (01.02.2008)
Published in Applied and Environmental Microbiology (01.02.2008)
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Effect of mono- and dichromatic light quality on growth rates and photosynthetic performance of Synechococcus sp. PCC 7002
Bernstein, Hans C, Konopka, Allan, Melnicki, Matthew R, Hill, Eric A, Kucek, Leo A, Zhang, Shuyi, Shen, Gaozhong, Bryant, Donald A, Beliaev, Alexander S
Published in Frontiers in microbiology (19.09.2014)
Published in Frontiers in microbiology (19.09.2014)
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Characterization of protein redox dynamics induced during light-to-dark transitions and nutrient limitation in cyanobacteria
Ansong, Charles, Sadler, Natalie C, Hill, Eric A, Lewis, Michael P, Zink, Erika M, Smith, Richard D, Beliaev, Alexander S, Konopka, Allan E, Wright, Aaron T
Published in Frontiers in microbiology (03.07.2014)
Published in Frontiers in microbiology (03.07.2014)
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Live Cell Chemical Profiling of Temporal Redox Dynamics in a Photoautotrophic Cyanobacterium
Sadler, Natalie C, Melnicki, Matthew R, Serres, Margrethe H, Merkley, Eric D, Chrisler, William B, Hill, Eric A, Romine, Margaret F, Kim, Sangtae, Zink, Erika M, Datta, Suchitra, Smith, Richard D, Beliaev, Alexander S, Konopka, Allan, Wright, Aaron T
Published in ACS chemical biology (17.01.2014)
Published in ACS chemical biology (17.01.2014)
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Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1
Marshall, Matthew J., Plymale, Andrew E., Kennedy, David W., Shi, Liang, Wang, Zheming, Reed, Samantha B., Dohnalkova, Alice C., Simonson, Cody J., Liu, Chongxuan, Saffarini, Daad A., Romine, Margaret F., Zachara, John M., Beliaev, Alexander S., Fredrickson, James K.
Published in Environmental microbiology (01.01.2008)
Published in Environmental microbiology (01.01.2008)
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