Joint profiling of histone modifications and transcriptome in single cells from mouse brain
Zhu, Chenxu, Zhang, Yanxiao, Li, Yang Eric, Lucero, Jacinta, Behrens, M. Margarita, Ren, Bing
Published in Nature methods (01.03.2021)
Published in Nature methods (01.03.2021)
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An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
Zhu, Chenxu, Yu, Miao, Huang, Hui, Juric, Ivan, Abnousi, Armen, Hu, Rong, Lucero, Jacinta, Behrens, M. Margarita, Hu, Ming, Ren, Bing
Published in Nature structural & molecular biology (01.11.2019)
Published in Nature structural & molecular biology (01.11.2019)
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Journal Article
Global Epigenomic Reconfiguration During Mammalian Brain Development
Lister, Ryan, Mukamel, Eran A., Nery, Joseph R., Urich, Mark, Puddifoot, Clare A., Johnson, Nicholas D., Lucero, Jacinta, Huang, Yun, Dwork, Andrew J., Schultz, Matthew D., Yu, Miao, Tonti-Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C., Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G., Sejnowski, Terrence J., Behrens, M. Margarita, Ecker, Joseph R.
Published in Science (American Association for the Advancement of Science) (09.08.2013)
Published in Science (American Association for the Advancement of Science) (09.08.2013)
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Journal Article
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Fang, Rongxin, Preissl, Sebastian, Li, Yang, Hou, Xiaomeng, Lucero, Jacinta, Wang, Xinxin, Motamedi, Amir, Shiau, Andrew K., Zhou, Xinzhu, Xie, Fangming, Mukamel, Eran A., Zhang, Kai, Zhang, Yanxiao, Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing
Published in Nature communications (26.02.2021)
Published in Nature communications (26.02.2021)
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Journal Article
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
Luo, Chongyuan, Keown, Christopher L., Kurihara, Laurie, Zhou, Jingtian, He, Yupeng, Li, Junhao, Castanon, Rosa, Lucero, Jacinta, Nery, Joseph R., Sandoval, Justin P., Bui, Brian, Sejnowski, Terrence J., Harkins, Timothy T., Mukamel, Eran A., Behrens, M. Margarita, Ecker, Joseph R.
Published in Science (American Association for the Advancement of Science) (11.08.2017)
Published in Science (American Association for the Advancement of Science) (11.08.2017)
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Journal Article
Ketamine-Induced Loss of Phenotype of Fast-Spiking Interneurons Is Mediated by NADPH-Oxidase
Behrens, M. Margarita, Ali, Sameh S, Dao, Diep N, Lucero, Jacinta, Shekhtman, Grigoriy, Quick, Kevin L, Dugan, Laura L
Published in Science (American Association for the Advancement of Science) (07.12.2007)
Published in Science (American Association for the Advancement of Science) (07.12.2007)
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Journal Article
Robust single-cell DNA methylome profiling with snmC-seq2
Luo, Chongyuan, Rivkin, Angeline, Zhou, Jingtian, Sandoval, Justin P., Kurihara, Laurie, Lucero, Jacinta, Castanon, Rosa, Nery, Joseph R., Pinto-Duarte, António, Bui, Brian, Fitzpatrick, Conor, O’Connor, Carolyn, Ruga, Seth, Van Eden, Marc E., Davis, David A., Mash, Deborah C., Behrens, M. Margarita, Ecker, Joseph R.
Published in Nature communications (20.09.2018)
Published in Nature communications (20.09.2018)
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Journal Article
Interleukin-6 Mediates the Increase in NADPH-Oxidase in the Ketamine Model of Schizophrenia
Behrens, M. Margarita, Ali, Sameh S, Dugan, Laura L
Published in The Journal of neuroscience (17.12.2008)
Published in The Journal of neuroscience (17.12.2008)
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Journal Article
Iterative single-cell multi-omic integration using online learning
Gao, Chao, Liu, Jialin, Kriebel, April R., Preissl, Sebastian, Luo, Chongyuan, Castanon, Rosa, Sandoval, Justin, Rivkin, Angeline, Nery, Joseph R., Behrens, Margarita M., Ecker, Joseph R., Ren, Bing, Welch, Joshua D.
Published in Nature biotechnology (01.08.2021)
Published in Nature biotechnology (01.08.2021)
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Journal Article
Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome
Lavery, Laura A, Ure, Kerstin, Wan, Ying-Wooi, Luo, Chongyuan, Trostle, Alexander J, Wang, Wei, Jin, Haijing, Lopez, Joanna, Lucero, Jacinta, Durham, Mark A, Castanon, Rosa, Nery, Joseph R, Liu, Zhandong, Goodell, Margaret, Ecker, Joseph R, Behrens, M Margarita, Zoghbi, Huda Y
Published in eLife (11.03.2020)
Published in eLife (11.03.2020)
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Journal Article
IL-6 mediated degeneration of forebrain GABAergic interneurons and cognitive impairment in aged mice through activation of neuronal NADPH oxidase
Dugan, Laura L, Ali, Sameh S, Shekhtman, Grigoriy, Roberts, Amanda J, Lucero, Jacinta, Quick, Kevin L, Behrens, M Margarita
Published in PloS one (13.05.2009)
Published in PloS one (13.05.2009)
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Journal Article
Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3
Li, Junhao, Pinto-Duarte, Antonio, Zander, Mark, Cuoco, Michael S, Lai, Chi-Yu, Osteen, Julia, Fang, Linjing, Luo, Chongyuan, Lucero, Jacinta D, Gomez-Castanon, Rosa, Nery, Joseph R, Silva-Garcia, Isai, Pang, Yan, Sejnowski, Terrence J, Powell, Susan B, Ecker, Joseph R, Mukamel, Eran A, Behrens, M Margarita
Published in eLife (23.05.2022)
Published in eLife (23.05.2022)
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Journal Article
Brain-wide correspondence of neuronal epigenomics and distant projections
Zhou, Jingtian, Zhang, Zhuzhu, Wu, May, Liu, Hanqing, Pang, Yan, Bartlett, Anna, Peng, Zihao, Ding, Wubin, Rivkin, Angeline, Lagos, Will N., Williams, Elora, Lee, Cheng-Ta, Miyazaki, Paula Assakura, Aldridge, Andrew, Zeng, Qiurui, Salinda, J. L. Angelo, Claffey, Naomi, Liem, Michelle, Fitzpatrick, Conor, Boggeman, Lara, Yao, Zizhen, Smith, Kimberly A., Tasic, Bosiljka, Altshul, Jordan, Kenworthy, Mia A., Valadon, Cynthia, Nery, Joseph R., Castanon, Rosa G., Patne, Neelakshi S., Vu, Minh, Rashid, Mohammad, Jacobs, Matthew, Ito, Tony, Osteen, Julia, Emerson, Nora, Lee, Jasper, Cho, Silvia, Rink, Jon, Huang, Hsiang-Hsuan, Pinto-Duartec, António, Dominguez, Bertha, Smith, Jared B., O’Connor, Carolyn, Zeng, Hongkui, Chen, Shengbo, Lee, Kuo-Fen, Mukamel, Eran A., Jin, Xin, Margarita Behrens, M., Ecker, Joseph R., Callaway, Edward M.
Published in Nature (London) (14.12.2023)
Published in Nature (London) (14.12.2023)
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Journal Article
Prolonged Exposure to NMDAR Antagonist Suppresses Inhibitory Synaptic Transmission in Prefrontal Cortex
Zhang, Yuchun, Behrens, M. Margarita, Lisman, John E
Published in Journal of neurophysiology (01.08.2008)
Published in Journal of neurophysiology (01.08.2008)
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Journal Article
A Specific Role for NR2A-Containing NMDA Receptors in the Maintenance of Parvalbumin and GAD67 Immunoreactivity in Cultured Interneurons
Kinney, Jefferson W, Davis, Christopher N, Tabarean, Iustin, Conti, Bruno, Bartfai, Tamas, Behrens, M. Margarita
Published in The Journal of neuroscience (01.02.2006)
Published in The Journal of neuroscience (01.02.2006)
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