Single-cell mutation identification via phylogenetic inference
Singer, Jochen, Kuipers, Jack, Jahn, Katharina, Beerenwinkel, Niko
Published in Nature communications (04.12.2018)
Published in Nature communications (04.12.2018)
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Journal Article
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Zagordi, Osvaldo, Bhattacharya, Arnab, Eriksson, Nicholas, Beerenwinkel, Niko
Published in BMC bioinformatics (26.04.2011)
Published in BMC bioinformatics (26.04.2011)
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Journal Article
Microbiome interactions shape host fitness
Gould, Alison L., Zhang, Vivian, 张维嘉, Lamberti, Lisa, Jones, Eric W., Obadia, Benjamin, Korasidis, Nikolaos, Gavryushkin, Alex, Carlson, Jean M., Beerenwinkel, Niko, Ludington, William B.
Published in Proceedings of the National Academy of Sciences - PNAS (18.12.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (18.12.2018)
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Journal Article
Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data
Malikic, Salem, Jahn, Katharina, Kuipers, Jack, Sahinalp, S Cenk, Beerenwinkel, Niko
Published in Nature communications (21.06.2019)
Published in Nature communications (21.06.2019)
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Journal Article
Cancer Evolution: Mathematical Models and Computational Inference
Beerenwinkel, Niko, Schwarz, Roland F., Gerstung, Moritz, Markowetz, Florian
Published in Systematic biology (01.01.2015)
Published in Systematic biology (01.01.2015)
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Journal Article
Recent advances in inferring viral diversity from high-throughput sequencing data
Posada-Cespedes, Susana, Seifert, David, Beerenwinkel, Niko
Published in Virus research (15.07.2017)
Published in Virus research (15.07.2017)
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Journal Article
Context-dependent deposition and regulation of mRNAs in P-bodies
Wang, Congwei, Schmich, Fabian, Srivatsa, Sumana, Weidner, Julie, Beerenwinkel, Niko, Spang, Anne
Published in eLife (03.01.2018)
Published in eLife (03.01.2018)
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Journal Article
Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics
Morita, Kiyomi, Wang, Feng, Jahn, Katharina, Hu, Tianyuan, Tanaka, Tomoyuki, Sasaki, Yuya, Kuipers, Jack, Loghavi, Sanam, Wang, Sa A, Yan, Yuanqing, Furudate, Ken, Matthews, Jairo, Little, Latasha, Gumbs, Curtis, Zhang, Jianhua, Song, Xingzhi, Thompson, Erika, Patel, Keyur P, Bueso-Ramos, Carlos E, DiNardo, Courtney D, Ravandi, Farhad, Jabbour, Elias, Andreeff, Michael, Cortes, Jorge, Bhalla, Kapil, Garcia-Manero, Guillermo, Kantarjian, Hagop, Konopleva, Marina, Nakada, Daisuke, Navin, Nicholas, Beerenwinkel, Niko, Futreal, P Andrew, Takahashi, Koichi
Published in Nature communications (21.10.2020)
Published in Nature communications (21.10.2020)
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Journal Article
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies
Zagordi, Osvaldo, Klein, Rolf, Däumer, Martin, Beerenwinkel, Niko
Published in Nucleic acids research (01.11.2010)
Published in Nucleic acids research (01.11.2010)
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Journal Article
From hype to reality: data science enabling personalized medicine
Fröhlich, Holger, Balling, Rudi, Beerenwinkel, Niko, Kohlbacher, Oliver, Kumar, Santosh, Lengauer, Thomas, Maathuis, Marloes H, Moreau, Yves, Murphy, Susan A, Przytycka, Teresa M, Rebhan, Michael, Röst, Hannes, Schuppert, Andreas, Schwab, Matthias, Spang, Rainer, Stekhoven, Daniel, Sun, Jimeng, Weber, Andreas, Ziemek, Daniel, Zupan, Blaz
Published in BMC medicine (27.08.2018)
Published in BMC medicine (27.08.2018)
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Journal Article
Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells
Golumbeanu, Monica, Cristinelli, Sara, Rato, Sylvie, Munoz, Miguel, Cavassini, Matthias, Beerenwinkel, Niko, Ciuffi, Angela
Published in Cell reports (Cambridge) (24.04.2018)
Published in Cell reports (Cambridge) (24.04.2018)
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Journal Article
A Hierarchical Regulatory Landscape during the Multiple Stages of EMT
Meyer-Schaller, Nathalie, Cardner, Mathias, Diepenbruck, Maren, Saxena, Meera, Tiede, Stefanie, Lüönd, Fabiana, Ivanek, Robert, Beerenwinkel, Niko, Christofori, Gerhard
Published in Developmental cell (25.02.2019)
Published in Developmental cell (25.02.2019)
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Journal Article
Inferring genetic interactions from comparative fitness data
Crona, Kristina, Gavryushkin, Alex, Greene, Devin, Beerenwinkel, Niko
Published in eLife (20.12.2017)
Published in eLife (20.12.2017)
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Journal Article