Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions
Krause, Sascha M. B., Johnson, Timothy, Karunaratne, Yasodara Samadhi, Fu, Yanfen, Beck, David A. C., Chistoserdova, Ludmila, Lidstrom, Mary E.
Published in Proceedings of the National Academy of Sciences - PNAS (10.01.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (10.01.2017)
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Journal Article
Attention-based generative models for de novo molecular design
Dollar, Orion, Joshi, Nisarg, Beck, David A C, Pfaendtner, Jim
Published in Chemical science (Cambridge) (14.05.2021)
Published in Chemical science (Cambridge) (14.05.2021)
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Journal Article
Continuous Molecular Representations of Ionic Liquids
Beckner, Wesley, Ashraf, Chowdhury, Lee, James, Beck, David A. C, Pfaendtner, Jim
Published in The journal of physical chemistry. B (24.09.2020)
Published in The journal of physical chemistry. B (24.09.2020)
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Journal Article
Genome-scale metabolic reconstructions and theoretical investigation of methane conversion in Methylomicrobium buryatense strain 5G(B1)
de la Torre, Andrea, Metivier, Aisha, Chu, Frances, Laurens, Lieve M L, Beck, David A C, Pienkos, Philip T, Lidstrom, Mary E, Kalyuzhnaya, Marina G
Published in Microbial cell factories (25.11.2015)
Published in Microbial cell factories (25.11.2015)
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Journal Article
Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response
Oshkin, Igor Y, Beck, David AC, Lamb, Andrew E, Tchesnokova, Veronika, Benuska, Gabrielle, McTaggart, Tami L, Kalyuzhnaya, Marina G, Dedysh, Svetlana N, Lidstrom, Mary E, Chistoserdova, Ludmila
Published in The ISME Journal (01.05.2015)
Published in The ISME Journal (01.05.2015)
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Journal Article
The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes
Beck, David A C, McTaggart, Tami L, Setboonsarng, Usanisa, Vorobev, Alexey, Kalyuzhnaya, Marina G, Ivanova, Natalia, Goodwin, Lynne, Woyke, Tanja, Lidstrom, Mary E, Chistoserdova, Ludmila
Published in PloS one (24.07.2014)
Published in PloS one (24.07.2014)
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Journal Article
Microbial community adaptation influences long-chain fatty acid conversion during anaerobic codigestion of fats, oils, and grease with municipal sludge
Ziels, Ryan M., Karlsson, Anna, Beck, David A.C., Ejlertsson, Jörgen, Yekta, Sepehr Shakeri, Bjorn, Annika, Stensel, H. David, Svensson, Bo H.
Published in Water research (Oxford) (15.10.2016)
Published in Water research (Oxford) (15.10.2016)
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Journal Article
Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera
Kalyuzhnaya, Marina G, Beck, David A. C, Vorobev, Alexey, Smalley, Nicole, Kunkel, Dennis D, Lidstrom, Mary E, Chistoserdova, Ludmila
Published in International journal of systematic and evolutionary microbiology (01.01.2012)
Published in International journal of systematic and evolutionary microbiology (01.01.2012)
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Journal Article
Author Correction: Homologous Pairs of Low and High Temperature Originating Proteins Spanning the Known Prokaryotic Universe
Komp, Evan, Alanzi, Humood N., Francis, Ryan, Vuong, Chau, Roberts, Logan, Mosallanejad, Amin, Beck, David A. C.
Published in Scientific data (31.10.2023)
Published in Scientific data (31.10.2023)
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Journal Article
Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates
Beck, David A. C., McTaggart, Tami L., Setboonsarng, Usanisa, Vorobev, Alexey, Goodwin, Lynne, Shapiro, Nicole, Woyke, Tanja, Kalyuzhnaya, Marina G., Lidstrom, Mary E., Chistoserdova, Ludmila
Published in Environmental microbiology (01.03.2015)
Published in Environmental microbiology (01.03.2015)
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Journal Article
Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption
Yu, Zheng, Beck, David A C, Chistoserdova, Ludmila
Published in Frontiers in microbiology (05.12.2017)
Published in Frontiers in microbiology (05.12.2017)
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Journal Article
Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations
Qin, Wei, Amin, Shady A, Lundeen, Rachel A, Heal, Katherine R, Martens-Habbena, Willm, Turkarslan, Serdar, Urakawa, Hidetoshi, Costa, Kyle C, Hendrickson, Erik L, Wang, Tony, Beck, David AC, Tiquia-Arashiro, Sonia M, Taub, Fred, Holmes, Andrew D, Vajrala, Neeraja, Berube, Paul M, Lowe, Todd M, Moffett, James W, Devol, Allan H, Baliga, Nitin S, Arp, Daniel J, Sayavedra-Soto, Luis A, Hackett, Murray, Armbrust, E Virginia, Ingalls, Anitra E, Stahl, David A
Published in The ISME Journal (01.02.2018)
Published in The ISME Journal (01.02.2018)
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Journal Article
Microscopic Reversibility of Protein Folding in Molecular Dynamics Simulations of the Engrailed Homeodomain
McCully, Michelle E, Beck, David A. C, Daggett, Valerie
Published in Biochemistry (Easton) (08.07.2008)
Published in Biochemistry (Easton) (08.07.2008)
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Journal Article
Quorum Sensing in a Methane-Oxidizing Bacterium
Puri, Aaron W, Schaefer, Amy L, Fu, Yanfen, Beck, David A C, Greenberg, E Peter, Lidstrom, Mary E
Published in Journal of bacteriology (01.03.2017)
Published in Journal of bacteriology (01.03.2017)
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Journal Article