Clinical and biological insights from viral genome sequencing
Houldcroft, Charlotte J., Beale, Mathew A., Breuer, Judith
Published in Nature reviews. Microbiology (01.03.2017)
Published in Nature reviews. Microbiology (01.03.2017)
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Journal Article
Genomic epidemiology on the move
Wilson, Catherine N., Musicha, Patrick, Beale, Mathew A.
Published in Nature reviews. Microbiology (01.02.2023)
Published in Nature reviews. Microbiology (01.02.2023)
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Journal Article
SARS-CoV-2 genomics as a springboard for future disease mitigation in LMICs
Belman, Sophie, Saha, Senjuti, Beale, Mathew A.
Published in Nature reviews. Microbiology (01.01.2022)
Published in Nature reviews. Microbiology (01.01.2022)
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Journal Article
Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages
Beale, Mathew A., Marks, Michael, Sahi, Sharon K., Tantalo, Lauren C., Nori, Achyuta V., French, Patrick, Lukehart, Sheila A., Marra, Christina M., Thomson, Nicholas R.
Published in Nature communications (22.07.2019)
Published in Nature communications (22.07.2019)
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Journal Article
Genomic Context of Azole Resistance Mutations in Aspergillus fumigatus Determined Using Whole-Genome Sequencing
Abdolrasouli, Alireza, Rhodes, Johanna, Beale, Mathew A, Hagen, Ferry, Rogers, Thomas R, Chowdhary, Anuradha, Meis, Jacques F, Armstrong-James, Darius, Fisher, Matthew C
Published in mBio (02.06.2015)
Published in mBio (02.06.2015)
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Journal Article
Efficient phagocytosis and laccase activity affect the outcome of HIV-associated cryptococcosis
Sabiiti, Wilber, Robertson, Emma, Beale, Mathew A, Johnston, Simon A, Brouwer, Annemarie E, Loyse, Angela, Jarvis, Joseph N, Gilbert, Andrew S, Fisher, Matthew C, Harrison, Thomas S, May, Robin C, Bicanic, Tihana
Published in The Journal of clinical investigation (01.05.2014)
Published in The Journal of clinical investigation (01.05.2014)
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Journal Article
Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort
Vanhove, Mathieu, Beale, Mathew A., Rhodes, Johanna, Chanda, Duncan, Lakhi, Shabir, Kwenda, Geoffrey, Molloy, Sile, Karunaharan, Natasha, Stone, Neil, Harrison, Thomas S., Bicanic, Tihana, Fisher, Matthew C.
Published in Molecular ecology (01.04.2017)
Published in Molecular ecology (01.04.2017)
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Journal Article
Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level
Rhodes, Johanna, Desjardins, Christopher A, Sykes, Sean M, Beale, Mathew A, Vanhove, Mathieu, Sakthikumar, Sharadha, Chen, Yuan, Gujja, Sharvari, Saif, Sakina, Chowdhary, Anuradha, Lawson, Daniel John, Ponzio, Vinicius, Colombo, Arnaldo Lopes, Meyer, Wieland, Engelthaler, David M, Hagen, Ferry, Illnait-Zaragozi, Maria Teresa, Alanio, Alexandre, Vreulink, Jo-Marie, Heitman, Joseph, Perfect, John R, Litvintseva, Anastasia P, Bicanic, Tihana, Harrison, Thomas S, Fisher, Matthew C, Cuomo, Christina A
Published in Genetics (Austin) (01.09.2017)
Published in Genetics (Austin) (01.09.2017)
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Journal Article
Genotypic Diversity Is Associated with Clinical Outcome and Phenotype in Cryptococcal Meningitis across Southern Africa
Beale, Mathew A, Sabiiti, Wilber, Robertson, Emma J, Fuentes-Cabrejo, Karen M, O'Hanlon, Simon J, Jarvis, Joseph N, Loyse, Angela, Meintjes, Graeme, Harrison, Thomas S, May, Robin C, Fisher, Matthew C, Bicanic, Tihana
Published in PLoS neglected tropical diseases (25.06.2015)
Published in PLoS neglected tropical diseases (25.06.2015)
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Journal Article
A Population Genomics Approach to Assessing the Genetic Basis of Within-Host Microevolution Underlying Recurrent Cryptococcal Meningitis Infection
Rhodes, Johanna, Beale, Mathew A, Vanhove, Mathieu, Jarvis, Joseph N, Kannambath, Shichina, Simpson, John A, Ryan, Anthea, Meintjes, Graeme, Harrison, Thomas S, Fisher, Matthew C, Bicanic, Tihana
Published in G3 : genes - genomes - genetics (01.04.2017)
Published in G3 : genes - genomes - genetics (01.04.2017)
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Journal Article
Trial of Three Rounds of Mass Azithromycin Administration for Yaws Eradication
John, Lucy N, Beiras, Camila G, Houinei, Wendy, Medappa, Monica, Sabok, Maria, Kolmau, Reman, Jonathan, Eunice, Maika, Edward, Wangi, James K, Pospíšilová, Petra, Šmajs, David, Ouchi, Dan, Galván-Femenía, Iván, Beale, Mathew A, Giacani, Lorenzo, Clotet, Bonaventura, Mooring, Eric Q, Marks, Michael, Vall-Mayans, Martí, Mitjà, Oriol
Published in The New England journal of medicine (06.01.2022)
Published in The New England journal of medicine (06.01.2022)
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Journal Article
Epidemiologic and Genomic Reidentification of Yaws, Liberia
Timothy, Joseph W S, Beale, Mathew A, Rogers, Emerson, Zaizay, Zeela, Halliday, Katherine E, Mulbah, Tarnue, Giddings, Romeo K, Walker, Stephen L, Thomson, Nicholas R, Kollie, Karsor K, Pullan, Rachel L, Marks, Michael
Published in Emerging infectious diseases (01.04.2021)
Published in Emerging infectious diseases (01.04.2021)
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Journal Article
Conference report: the first bacterial genome sequencing pan-European network conference
Germuskova, Zoja, Sosa, Elisa, Lagos, Amaya Campillay, Aamot, Hege Vangstein, Beale, Mathew A., Bertelli, Claire, Björkmann, Jonas, Couto, Natacha, Feige, Lena, Greub, Gilbert, Hallbäck, Erika Tång, Hodcroft, Emma B., Harmsen, Dag, Jacob, Laurent, Jolley, Keith A., Kahles, Andre, Mather, Alison E., Neher, Richard A., Neves, Aitana, Niemann, Stefan, Nolte, Oliver, Peacock, Sharon J., Razavi, Mohammad, Roloff, Tim, Schrenzel, Jacques, Sikora, Per, Sundqvist, Martin, Mölling, Paula, Egli, Adrian
Published in Microbes and infection (30.08.2024)
Published in Microbes and infection (30.08.2024)
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Journal Article
Genomic epidemiology reveals multidrug resistant plasmid spread between Vibrio cholerae lineages in Yemen
Lassalle, Florent, Al-Shalali, Salah, Al-Hakimi, Mukhtar, Njamkepo, Elisabeth, Bashir, Ismail Mahat, Dorman, Matthew J., Rauzier, Jean, Blackwell, Grace A., Taylor-Brown, Alyce, Beale, Mathew A., Cazares, Adrián, Al-Somainy, Ali Abdullah, Al-Mahbashi, Anas, Almoayed, Khaled, Aldawla, Mohammed, Al-Harazi, Abdulelah, Quilici, Marie-Laure, Weill, François-Xavier, Dhabaan, Ghulam, Thomson, Nicholas R.
Published in Nature microbiology (01.10.2023)
Published in Nature microbiology (01.10.2023)
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Journal Article
Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults
Lewis, Joseph M., Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A., Heinz, Eva, Mallewa, Jane, Jewell, Christopher, Faragher, Brian, Thomson, Nicholas R., Feasey, Nicholas A.
Published in Nature microbiology (01.10.2022)
Published in Nature microbiology (01.10.2022)
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Journal Article
Salmonella carriage by geckos detected within households in Malawi
Wilson, Catherine N., Musicha, Patrick, Beale, Mathew A., Diness, Yohane, Kanjerwa, Oscar, Salifu, Chifundo, Katuah, Zefaniah, Duncan, Patricia, Nyangu, John, Mungu, Andrew, Deleza, Muonaouza, Banda, Lawrence, Makhaza, Lumbani, Elviss, Nicola, Jewell, Christopher P., Pinchbeck, Gina, Thomson, Nicholas R., Feasey, Nicholas A., Fèvre, Eric M.
Published in One health (01.12.2024)
Published in One health (01.12.2024)
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Journal Article
Genomic and antigenic diversity of colonizing Klebsiella pneumoniae isolates mirrors that of invasive isolates in Blantyre, Malawi
Lewis, Joseph M, Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A, Mallewa, Jane, Heinz, Eva, Thomson, Nicholas R, Feasey, Nicholas A
Published in Microbial genomics (01.03.2022)
Published in Microbial genomics (01.03.2022)
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