The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition
Sperber, Henrik, Mathieu, Julie, Wang, Yuliang, Ferreccio, Amy, Hesson, Jennifer, Xu, Zhuojin, Fischer, Karin A, Devi, Arikketh, Detraux, Damien, Gu, Haiwei, Battle, Stephanie L, Showalter, Megan, Valensisi, Cristina, Bielas, Jason H, Ericson, Nolan G, Margaretha, Lilyana, Robitaille, Aaron M, Margineantu, Daciana, Fiehn, Oliver, Hockenbery, David, Blau, C Anthony, Raftery, Daniel, Margolin, Adam A, Hawkins, R David, Moon, Randall T, Ware, Carol B, Ruohola-Baker, Hannele
Published in Nature cell biology (01.12.2015)
Published in Nature cell biology (01.12.2015)
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Journal Article
Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation
Yu, Bo, Doni Jayavelu, Naresh, Battle, Stephanie L, Mar, Jessica C, Schimmel, Timothy, Cohen, Jacques, Hawkins, R David
Published in PloS one (05.11.2020)
Published in PloS one (05.11.2020)
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Journal Article
Superovulation alters global DNA methylation in early mouse embryo development
Yu, Bo, Smith, Thomas H., Battle, Stephanie L., Ferrell, Shannon, Hawkins, R. David
Published in Epigenetics (03.08.2019)
Published in Epigenetics (03.08.2019)
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Journal Article
Deleterious heteroplasmic mitochondrial mutations are associated with an increased risk of overall and cancer-specific mortality
Hong, Yun Soo, Battle, Stephanie L, Shi, Wen, Puiu, Daniela, Pillalamarri, Vamsee, Xie, Jiaqi, Pankratz, Nathan, Lake, Nicole J, Lek, Monkol, Rotter, Jerome I, Rich, Stephen S, Kooperberg, Charles, Reiner, Alex P, Auer, Paul L, Heard-Costa, Nancy, Liu, Chunyu, Lai, Meng, Murabito, Joanne M, Levy, Daniel, Grove, Megan L, Alonso, Alvaro, Gibbs, Richard, Dugan-Perez, Shannon, Gondek, Lukasz P, Guallar, Eliseo, Arking, Dan E
Published in Nature communications (30.09.2023)
Published in Nature communications (30.09.2023)
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Journal Article
Circadian Clock-Regulated Phosphate Transporter PHT4;1 Plays an Important Role in Arabidopsis Defense
Wang, Guo-Ying, Shi, Jiang-Li, Ng, Gina, Battle, Stephanie L., Zhang, Chong, Lu, Hua
Published in Molecular plant (01.05.2011)
Published in Molecular plant (01.05.2011)
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Journal Article
Enhancer Chromatin and 3D Genome Architecture Changes from Naive to Primed Human Embryonic Stem Cell States
Battle, Stephanie L., Doni Jayavelu, Naresh, Azad, Robert N., Hesson, Jennifer, Ahmed, Faria N., Overbey, Eliah G., Zoller, Joseph A., Mathieu, Julie, Ruohola-Baker, Hannele, Ware, Carol B., Hawkins, R. David
Published in Stem cell reports (14.05.2019)
Published in Stem cell reports (14.05.2019)
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Journal Article
Methylome Analysis of Human Bone Marrow MSCs Reveals Extensive Age- and Culture-Induced Changes at Distal Regulatory Elements
Pasumarthy, Kalyan K., Doni Jayavelu, Naresh, Kilpinen, Lotta, Andrus, Colin, Battle, Stephanie L., Korhonen, Matti, Lehenkari, Petri, Lund, Riikka, Laitinen, Saara, Hawkins, R. David
Published in Stem cell reports (12.09.2017)
Published in Stem cell reports (12.09.2017)
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Journal Article
Rare and common genetic determinants of mitochondrial function determine severity but not risk of amyotrophic lateral sclerosis
Harvey, Calum, Weinreich, Marcel, Lee, James A.K., Shaw, Allan C., Ferraiuolo, Laura, Mortiboys, Heather, Zhang, Sai, Hop, Paul J., Zwamborn, Ramona A.J., van Eijk, Kristel, Julian, Thomas H., Moll, Tobias, Iacoangeli, Alfredo, Al Khleifat, Ahmad, Quinn, John P., Pfaff, Abigail L., Kõks, Sulev, Poulton, Joanna, Battle, Stephanie L., Arking, Dan E., Snyder, Michael P., Veldink, Jan H., Kenna, Kevin P., Shaw, Pamela J., Cooper-Knock, Johnathan
Published in Heliyon (15.02.2024)
Published in Heliyon (15.02.2024)
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Journal Article
Long-Term Air Pollution Exposure and Mitochondrial DNA Copy Number: An Analysis of UK Biobank Data
Hong, Yun Soo, Battle, Stephanie L, Puiu, Daniela, Shi, Wen, Pankratz, Nathan, Zhao, Di, Arking, Dan E, Guallar, Eliseo
Published in Environmental health perspectives (01.05.2023)
Published in Environmental health perspectives (01.05.2023)
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Journal Article
cChIP-seq: a robust small-scale method for investigation of histone modifications
Valensisi, Cristina, Liao, Jo Ling, Andrus, Colin, Battle, Stephanie L, Hawkins, R David
Published in BMC genomics (21.12.2015)
Published in BMC genomics (21.12.2015)
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Journal Article
A bioinformatics pipeline for estimating mitochondrial DNA copy number and heteroplasmy levels from whole genome sequencing data
Battle, Stephanie L, Puiu, Daniela, Verlouw, Joost, Broer, Linda, Boerwinkle, Eric, Taylor, Kent D, Rotter, Jerome I, Rich, Stephan S, Grove, Megan L, Pankratz, Nathan, Fetterman, Jessica L, Liu, Chunyu, Arking, Dan E
Published in NAR genomics and bioinformatics (01.06.2022)
Published in NAR genomics and bioinformatics (01.06.2022)
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Journal Article
Quantifying constraint in human mitochondrial DNA
Lake, Nicole J, Liu, Wei, Battle, Stephanie L, Laricchia, Kristen M, Tiao, Grace, Compton, Alison G, Cowie, Shannon, Christodoulou, John, Thorburn, David R, Zhao, Hongyu, Arking, Dan E, Sunyaev, Shamil R, Lek, Monkol
Published in bioRxiv (19.12.2022)
Published in bioRxiv (19.12.2022)
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