Compendium of human transcription factor effector domains
Soto, Luis F., Li, Zhaorong, Santoso, Clarissa S., Berenson, Anna, Ho, Isabella, Shen, Vivian X., Yuan, Samson, Fuxman Bass, Juan I.
Published in Molecular cell (03.02.2022)
Published in Molecular cell (03.02.2022)
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Journal Article
Using networks to measure similarity between genes: association index selection
Fuxman Bass, Juan I, Diallo, Alos, Nelson, Justin, Soto, Juan M, Myers, Chad L, Walhout, Albertha J M
Published in Nature methods (01.12.2013)
Published in Nature methods (01.12.2013)
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Journal Article
Human gene-centered transcription factor networks for enhancers and disease variants
Fuxman Bass, Juan I, Sahni, Nidhi, Shrestha, Shaleen, Garcia-Gonzalez, Aurian, Mori, Akihiro, Bhat, Numana, Yi, Song, Hill, David E, Vidal, Marc, Walhout, Albertha J M
Published in Cell (23.04.2015)
Published in Cell (23.04.2015)
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Journal Article
A functional screen identifies transcriptional networks that regulate HIV-1 and HIV-2
Pedro, Kyle D, Agosto, Luis M, Sewell, Jared A, Eberenz, Kimberly A, He, Xianbao, Fuxman Bass, Juan I, Henderson, Andrew J
Published in Proceedings of the National Academy of Sciences - PNAS (16.03.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (16.03.2021)
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Journal Article
Intragenic proviral elements support transcription of defective HIV-1 proviruses
Kuniholm, Jeffrey, Armstrong, Elise, Bernabe, Brandy, Coote, Carolyn, Berenson, Anna, Patalano, Samantha D, Olson, Alex, He, Xianbao, Lin, Nina H, Fuxman Bass, Juan I, Henderson, Andrew J
Published in PLoS pathogens (01.12.2021)
Published in PLoS pathogens (01.12.2021)
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Journal Article
Essential role of a ThPOK autoregulatory loop in the maintenance of mature CD4 + T cell identity and function
Basu, Jayati, Reis, Bernardo S, Peri, Suraj, Zha, Jikun, Hua, Xiang, Ge, Lu, Ferchen, Kyle, Nicolas, Emmanuelle, Czyzewicz, Philip, Cai, Kathy Q, Tan, Yinfei, Fuxman Bass, Juan I, Walhout, Albertha J M, Grimes, H Leighton, Grivennikov, Sergei I, Mucida, Daniel, Kappes, Dietmar J
Published in Nature immunology (01.08.2021)
Published in Nature immunology (01.08.2021)
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Journal Article
Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities
Narasimhan, Kamesh, Lambert, Samuel A, Yang, Ally W H, Riddell, Jeremy, Mnaimneh, Sanie, Zheng, Hong, Albu, Mihai, Najafabadi, Hamed S, Reece-Hoyes, John S, Fuxman Bass, Juan I, Walhout, Albertha J M, Weirauch, Matthew T, Hughes, Timothy R
Published in eLife (23.04.2015)
Published in eLife (23.04.2015)
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Journal Article
Identification of Single Nucleotide Non-coding Driver Mutations in Cancer
Gan, Kok A, Carrasco Pro, Sebastian, Sewell, Jared A, Bass, Juan I Fuxman
Published in Frontiers in genetics (02.02.2018)
Published in Frontiers in genetics (02.02.2018)
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Journal Article
Human Virus Transcriptional Regulators
Liu, Xing, Hong, Ted, Parameswaran, Sreeja, Ernst, Kevin, Marazzi, Ivan, Weirauch, Matthew T., Fuxman Bass, Juan I.
Published in Cell (09.07.2020)
Published in Cell (09.07.2020)
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Journal Article
Widespread macromolecular interaction perturbations in human genetic disorders
Sahni, Nidhi, Yi, Song, Taipale, Mikko, Fuxman Bass, Juan I, Coulombe-Huntington, Jasmin, Yang, Fan, Peng, Jian, Weile, Jochen, Karras, Georgios I, Wang, Yang, Kovács, István A, Kamburov, Atanas, Krykbaeva, Irina, Lam, Mandy H, Tucker, George, Khurana, Vikram, Sharma, Amitabh, Liu, Yang-Yu, Yachie, Nozomu, Zhong, Quan, Shen, Yun, Palagi, Alexandre, San-Miguel, Adriana, Fan, Changyu, Balcha, Dawit, Dricot, Amelie, Jordan, Daniel M, Walsh, Jennifer M, Shah, Akash A, Yang, Xinping, Stoyanova, Ani K, Leighton, Alex, Calderwood, Michael A, Jacob, Yves, Cusick, Michael E, Salehi-Ashtiani, Kourosh, Whitesell, Luke J, Sunyaev, Shamil, Berger, Bonnie, Barabási, Albert-László, Charloteaux, Benoit, Hill, David E, Hao, Tong, Roth, Frederick P, Xia, Yu, Walhout, Albertha J M, Lindquist, Susan, Vidal, Marc
Published in Cell (23.04.2015)
Published in Cell (23.04.2015)
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Identification of conserved skeletal enhancers associated with craniosynostosis risk genes
He 何璇, Xuan Anita, Berenson, Anna, Bernard, Michelle, Weber, Chris, Cook, Laura E, Visel, Axel, Fuxman Bass, Juan I, Fisher, Shannon
Published in Human molecular genetics (04.05.2024)
Published in Human molecular genetics (04.05.2024)
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Journal Article
Theory and Application of Network Biology Toward Precision Medicine
Demchak, Barry, Kreisberg, Jason F., Fuxman Bass, Juan I.
Published in Journal of molecular biology (14.09.2018)
Published in Journal of molecular biology (14.09.2018)
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Journal Article
Comprehensive mapping of the human cytokine gene regulatory network
Santoso, Clarissa S, Li, Zhaorong, Lal, Sneha, Yuan, Samson, Gan, Kok Ann, Agosto, Luis M, Liu, Xing, Pro, Sebastian Carrasco, Sewell, Jared A, Henderson, Andrew, Atianand, Maninjay K, Fuxman Bass, Juan I
Published in Nucleic acids research (02.12.2020)
Published in Nucleic acids research (02.12.2020)
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Journal Article
Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors
Berenson, Anna, Lane, Ryan, Soto-Ugaldi, Luis F, Patel, Mahir, Ciausu, Cosmin, Li, Zhaorong, Chen, Yilin, Shah, Sakshi, Santoso, Clarissa, Liu, Xing, Spirohn, Kerstin, Hao, Tong, Hill, David E, Vidal, Marc, Fuxman Bass, Juan I
Published in Nature communications (18.10.2023)
Published in Nature communications (18.10.2023)
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Journal Article
Transcription factors in the development and treatment of immune disorders
Patalano, Samantha D, Fuxman Bass, Paula, Fuxman Bass, Juan I
Published in Transcription (15.12.2023)
Published in Transcription (15.12.2023)
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Journal Article
Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters
Fuxman Bass, Juan I, Tamburino, Alex M, Mori, Akihiro, Beittel, Nathan, Weirauch, Matthew T, Reece-Hoyes, John S, Walhout, Albertha J M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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