A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease
Canela, Victor Hugo, Bowen, William S, Ferreira, Ricardo Melo, Syed, Farooq, Lingeman, James E, Sabo, Angela R, Barwinska, Daria, Winfree, Seth, Lake, Blue B, Cheng, Ying-Hua, Gaut, Joseph P, Ferkowicz, Michael, LaFavers, Kaice A, Zhang, Kun, Coe, Fredric L, Worcester, Elaine, Jain, Sanjay, Eadon, Michael T, Williams, Jr, James C, El-Achkar, Tarek M
Published in Nature communications (19.07.2023)
Published in Nature communications (19.07.2023)
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Integration of spatial and single-cell transcriptomics localizes epithelial cell-immune cross-talk in kidney injury
Melo Ferreira, Ricardo, Sabo, Angela R, Winfree, Seth, Collins, Kimberly S, Janosevic, Danielle, Gulbronson, Connor J, Cheng, Ying-Hua, Casbon, Lauren, Barwinska, Daria, Ferkowicz, Michael J, Xuei, Xiaoling, Zhang, Chi, Dunn, Kenneth W, Kelly, Katherine J, Sutton, Timothy A, Hato, Takashi, Dagher, Pierre C, El-Achkar, Tarek M, Eadon, Michael T
Published in JCI insight (22.06.2021)
Published in JCI insight (22.06.2021)
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VEGFR3 tyrosine kinase inhibition aggravates cisplatin nephrotoxicity
Black, Laurence M, Farrell, Elisa R, Barwinska, Daria, Osis, Gunars, Zmijewska, Anna A, Traylor, Amie M, Esman, Stephanie K, Bolisetty, Subhashini, Whipple, Grace, Kamocka, Malgorzata M, Winfree, Seth, Spangler, Daryll R, Khan, Shehnaz, Zarjou, Abolfazl, El-Achkar, Tarek M, Agarwal, Anupam
Published in American journal of physiology. Renal physiology (01.12.2021)
Published in American journal of physiology. Renal physiology (01.12.2021)
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Alterations in Protein Translation and Carboxylic Acid Catabolic Processes in Diabetic Kidney Disease
Collins, Kimberly S, Eadon, Michael T, Cheng, Ying-Hua, Barwinska, Daria, Melo Ferreira, Ricardo, McCarthy, Thomas W, Janosevic, Danielle, Syed, Farooq, Maier, Bernhard, El-Achkar, Tarek M, Kelly, Katherine J, Phillips, Carrie L, Hato, Takashi, Sutton, Timothy A, Dagher, Pierre C
Published in Cells (Basel, Switzerland) (30.03.2022)
Published in Cells (Basel, Switzerland) (30.03.2022)
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A Precision Medicine Approach Uncovers a Unique Signature of Neutrophils in Patients With Brushite Kidney Stones
Makki, Mohammad Shahidul, Winfree, Seth, Lingeman, James E., Witzmann, Frank A., Worcester, Elaine M., Krambeck, Amy E., Coe, Fredric L., Evan, Andrew P., Bledsoe, Sharon, Bergsland, Kristin J., Khochare, Suraj, Barwinska, Daria, Williams, James C., El-Achkar, Tarek M.
Published in Kidney international reports (01.05.2020)
Published in Kidney international reports (01.05.2020)
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Mucosal Perfusion Preservation by a Novel Shapeable Tissue Expander for Oral Reconstruction
Barwinska, Daria, Garner, John, Davidson, Darrell D, Cook, Todd G, Eckert, George J, Tholpady, Sunil S, March, Keith L, Park, Kinam, Barco, Clark T
Published in Plastic and reconstructive surgery. Global open (01.08.2017)
Published in Plastic and reconstructive surgery. Global open (01.08.2017)
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CODEX Multiplex Imaging Uncovers Unique Cell Types, States, and Niches in Health and Disease: TH-OR41
Barwinska, Daria, Sabo, Angela R., Winfree, Seth, Gulbronson, Connor J., Eadon, Michael T., Williams, James C., El-Achkar, Tarek M.
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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AKI Results in Sustained, Long-Term Alterations of Kidney Lymphatics: SA-PO172
Ghajar-Rahimi, Gelare, Barwinska, Daria, Whipple, Grace, Kamocka, Malgorzata, Khan, Shehnaz, Winfree, Seth, George, James F., El-Achkar, Tarek M., Agarwal, Anupam
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Integration of CODEX and Brightfield Histology for Cell Type Segmentation and Classification Using Deep Learning: FR-PO029
Lucarelli, Nicholas, Winfree, Seth, Sabo, Angela R., Border, Samuel, Barwinska, Daria, Laszik, Zoltan G., Eadon, Michael T., El-Achkar, Tarek M., Jain, Sanjay, Sarder, Pinaki
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Identifying Diabetic Kidney Disease Signatures in the Nuclei of the Tubular Epithelium Using a Novel Deep Learning Approach: FR-OR12
Winfree, Seth, Barwinska, Daria, Talukder, Niloy, Eadon, Michael T., Dagher, Pierre C., Hasan, Mohammad A., El-Achkar, Tarek M.
Published in Journal of the American Society of Nephrology (01.10.2021)
Published in Journal of the American Society of Nephrology (01.10.2021)
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Molecular Signatures of Glomerular Neovascularization in a Patient With Diabetic Kidney Disease: PUB102
Barwinska, Daria, Verma, Ashish, Ferkowicz, Michael J., ferreira, Ricardo Melo, Henderson, Joel M., Steenkamp, Devin, Phillips, Carrie L., Kirkpatrick, Mary P., Waikar, Sushrut S., Sutton, Timothy A.
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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Combination of Transcriptional Signatures and 3D Images of Epithelial Nuclei in Kidney Biopsies Using a Deep-Learning Outlier Detection Model Uncovers Signatures of Injury in Diabetic Kidney Disease: FR-OR34
Winfree, Seth, Barwinska, Daria, Zhuang, Jun, Talukder, Niloy, Eadon, Michael T., Dagher, Pierre C., Hasan, Mohammad A., El-Achkar, Tarek M.
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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Detection of Myeloid Cell Pleiotropy In Situ and the Unique Niches of Immune Cells in Ischemic Kidney Injury Using CODEX Imaging: FR-PO149
Sabo, Angela R., Maghak, Lauren A., Gulbronson, Connor J., Khan, Shehnaz, Micanovic, Radmila, LaFavers, Kaice A., Barwinska, Daria, Williams, James C., El-Achkar, Tarek M., Winfree, Seth
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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Proximal Tubule Neighborhood in AKI, CKD, and Healthy Control Kidney Tissue Using Spatial Transcriptomics: FR-PO017
Asghari, Mahla, Ferreira, Ricardo Melo, Cheng, Ying-Hua, Gisch, Debora L., Barwinska, Daria, Sabo, Angela R., Kretzler, Matthias, Himmelfarb, Jonathan, Dagher, Pierre C., Winfree, Seth, Jain, Sanjay, El-Achkar, Tarek M., Eadon, Michael T.
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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A Spatial Atlas of the Human Kidneys of Cell Types and Functional Tissue Units Identified in Highly Multiplexed Immunofluorescence Images: FR-OR57
Winfree, Seth, Sabo, Angela R., Barwinska, Daria, Cheng, Ying-Hua, Bowen, William S., Ferkowicz, Michael J., Ferreira, Ricardo Melo, Kaushal, Madhurima, Gaut, Joseph, Eadon, Michael T., El-Achkar, Tarek M., Jain, Sanjay
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Diverse Immune, Stromal, and Vascular Niches Along the Cortico-Medullary Axis of the Human Kidneys by Integrating 10 Different Modalities Performed on the Same Tissue Block: FR-PO021
Winfree, Seth, Lake, Blue, Ferreira, Ricardo Melo, Fung, Anthony A., Sabo, Angela R., Kaushal, Madhurima, Barwinska, Daria, Zhang, Bo, Gaut, Joseph, Zhang, Kun, Shi, Lingyan, Eadon, Michael T., El-Achkar, Tarek M., Jain, Sanjay
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Regulation of the Adaptive Proximal Tubule Cell State by ELF3, KLF6, and KLF10: FR-PO014
Gisch, Debora L., Lake, Blue, Basta, Jeannine M., Pherson, Michelle, Cheng, Ying-Hua, Ferreira, Ricardo Melo, Barwinska, Daria, Asghari, Mahla, El-Achkar, Tarek M., Mollah, Shamim, Himmelfarb, Jonathan, Kretzler, Matthias, Dagher, Pierre C., Jain, Sanjay, Rauchman, Michael I., Eadon, Michael T.
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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PD38-06 LASER MICRODISSECTION OF HUMAN CALCIUM OXALATE MONOHYDRATE STONES ENABLES STRUCTURALLY SPECIFIC EXPLORATION OF THE STONE PROTEOME
Hugo Canela, Victor, Bledsoe, Sharon, Barwinska, Daria, Lingeman, James E., Ashkar, Tarek M., Williams, James C.
Published in The Journal of urology (01.04.2019)
Published in The Journal of urology (01.04.2019)
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