SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses
Eagles, Nicholas J, Burke, Emily E, Leonard, Jacob, Barry, Brianna K, Stolz, Joshua M, Huuki, Louise, Phan, BaDoi N, Serrato, Violeta Larios, Gutiérrez-Millán, Everardo, Aguilar-Ordoñez, Israel, Jaffe, Andrew E, Collado-Torres, Leonardo
Published in BMC bioinformatics (01.05.2021)
Published in BMC bioinformatics (01.05.2021)
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Journal Article
Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses
Eagles, Nicholas J, Burke, Emily E, Leonard, Jacob, Barry, Brianna K, Stolz, Joshua M, Huuki, Louise, Phan, BaDoi N, Serrato, Violeta Larios, Gutiérrez-Millán, Everardo, Aguilar-Ordoéez, Israel, Jaffe, Andrew E, Collado-Torres, Leonardo
Published in BMC bioinformatics (22.07.2021)
Published in BMC bioinformatics (22.07.2021)
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Journal Article
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Maynard, Kristen R., Collado-Torres, Leonardo, Weber, Lukas M., Uytingco, Cedric, Barry, Brianna K., Williams, Stephen R., Catallini, Joseph L., Tran, Matthew N., Besich, Zachary, Tippani, Madhavi, Chew, Jennifer, Yin, Yifeng, Kleinman, Joel E., Hyde, Thomas M., Rao, Nikhil, Hicks, Stephanie C., Martinowich, Keri, Jaffe, Andrew E.
Published in Nature neuroscience (01.03.2021)
Published in Nature neuroscience (01.03.2021)
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Journal Article
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Tran, Matthew N., Maynard, Kristen R., Spangler, Abby, Huuki, Louise A., Montgomery, Kelsey D., Sadashivaiah, Vijay, Tippani, Madhavi, Barry, Brianna K., Hancock, Dana B., Hicks, Stephanie C., Kleinman, Joel E., Hyde, Thomas M., Collado-Torres, Leonardo, Jaffe, Andrew E., Martinowich, Keri
Published in Neuron (Cambridge, Mass.) (06.10.2021)
Published in Neuron (Cambridge, Mass.) (06.10.2021)
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Journal Article
Publisher Correction: Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Maynard, Kristen R., Collado-Torres, Leonardo, Weber, Lukas M., Uytingco, Cedric, Barry, Brianna K., Williams, Stephen R., Catallini, Joseph L., Tran, Matthew N., Besich, Zachary, Tippani, Madhavi, Chew, Jennifer, Yin, Yifeng, Kleinman, Joel E., Hyde, Thomas M., Rao, Nikhil, Hicks, Stephanie C., Martinowich, Keri, Jaffe, Andrew E.
Published in Nature neuroscience (01.04.2021)
Published in Nature neuroscience (01.04.2021)
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Journal Article
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Maynard, Kristen E, Collado-Torres, Leonardo, Weber, Lukas M, Uytingco, Cedric, Barry, Brianna K, Williams, Stephen R, Catallini, Joseph L, Tran, Matthew N, Besich, Zachary, Tippani, Madhavi, Chew, Jennifer, Yin, Yifeng, Kleinman, Joel E, Hyde, Thomas M, Rao, Nikhil, Hicks, Stephanie C, Martinowich, Keri, Jaffe, Andrew E
Published in bioRxiv (28.02.2020)
Published in bioRxiv (28.02.2020)
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Paper
Decoding shared versus divergent transcriptomic signatures across cortico-amygdala circuitry in PTSD and depressive disorders
Jaffe, Andrew E, Barry, Brianna K, Tao, Ran, Tran, Matthew N, Page, Stephanie C, Maynard, Kristen R, Pattie, Elizabeth A, Nguyen, Claudia V, Deep-Soboslay, Amy, Bharadwaj, Rahul, Young, Keith A, Friedman, Matthew J, Williamson, Douglas E, Traumatic Stress Brain Research Group, Shin, Joo Heon, Hyde, Thomas M, Martinowich, Keri, Kleinman, Joel E
Published in bioRxiv (13.01.2021)
Published in bioRxiv (13.01.2021)
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Paper
SPEAQeasy: a Scalable Pipeline for Expression Analysis and Quantification for R/Bioconductor-powered RNA-seq analyses
Eagles, Nicholas J, Burke, Emily E, Leonard, Jacob, Barry, Brianna K, Stolz, Joshua M, Huuki, Louise, Phan, Badoi N, Violeta Larios Serrato, Gutiérrez-Millán, Everardo, Aguilar-Ordoñez, Israel, Jaffe, Andrew E, Collado-Torres, Leonardo
Published in bioRxiv (11.12.2020)
Published in bioRxiv (11.12.2020)
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Paper
Single-nucleus transcriptome analysis reveals cell type-specific molecular signatures across reward circuitry in the human brain
Tran, Matthew N, Maynard, Kristen R, Spangler, Abby, Collado-Torres, Leonardo, Sadashivaiah, Vijay, Tippani, Madhavi, Barry, Brianna K, Hancock, Dana B, Hicks, Stephanie C, Kleinman, Joel E, Hyde, Thomas M, Martinowich, Keri, Jaffe, Andrew E
Published in bioRxiv (08.10.2020)
Published in bioRxiv (08.10.2020)
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Paper