Kinetics of Xist -induced gene silencing can be predicted from combinations of epigenetic and genomic features
Barros de Andrade E Sousa, Lisa, Jonkers, Iris, Syx, Laurène, Dunkel, Ilona, Chaumeil, Julie, Picard, Christel, Foret, Benjamin, Chen, Chong-Jian, Lis, John T, Heard, Edith, Schulz, Edda G, Marsico, Annalisa
Published in Genome research (01.07.2019)
Published in Genome research (01.07.2019)
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deepregression : A Flexible Neural Network Framework for Semi-Structured Deep Distributional Regression
Rügamer, David, Kolb, Chris, Fritz, Cornelius, Pfisterer, Florian, Kopper, Philipp, Bischl, Bernd, Shen, Ruolin, Bukas, Christina, Sousa, Lisa Barros de Andrade e, Thalmeier, Dominik, Baumann, Philipp F. M., Kook, Lucas, Klein, Nadja, Müller, Christian L.
Published in Journal of statistical software (2023)
Published in Journal of statistical software (2023)
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Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes
Jeong, Yunhee, de Andrade e Sousa, Lisa Barros, Thalmeier, Dominik, Toth, Reka, Ganslmeier, Marlene, Breuer, Kersten, Plass, Christoph, Lutsik, Pavlo
Published in Briefings in bioinformatics (18.07.2022)
Published in Briefings in bioinformatics (18.07.2022)
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Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration
Yu, Yanying, Gawlitt, Sandra, de Andrade E Sousa, Lisa Barros, Merdivan, Erinc, Piraud, Marie, Beisel, Chase L, Barquist, Lars
Published in Genome Biology (11.01.2024)
Published in Genome Biology (11.01.2024)
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deepregression: a Flexible Neural Network Framework for Semi-Structured Deep Distributional Regression
Rügamer, David, Kolb, Chris, Fritz, Cornelius, Pfisterer, Florian, Kopper, Philipp, Bischl, Bernd, Shen, Ruolin, Bukas, Christina, Sousa, Lisa Barros de Andrade e, Thalmeier, Dominik, Baumann, Philipp, Kook, Lucas, Klein, Nadja, Müller, Christian L
Year of Publication 06.04.2021
Year of Publication 06.04.2021
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Journal Article
Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes
Jeong, Yunhee, Lisa Barros De Andrade E Sousa, Thalmeier, Dominik, Toth, Reka, Ganslmeier, Marlene, Breuer, Kersten, Plass, Christoph, Lutsik, Pavlo
Published in bioRxiv (18.03.2022)
Published in bioRxiv (18.03.2022)
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Paper
deepregression: a Flexible Neural Network Framework for Semi-Structured Deep Distributional Regression
Rügamer, David, Kolb, Chris, Fritz, Cornelius, Pfisterer, Florian, Kopper, Philipp, Bischl, Bernd, Shen, Ruolin, Bukas, Christina, Lisa Barros de Andrade e Sousa, Thalmeier, Dominik, Baumann, Philipp, Lucas Kook, Klein, Nadja, Müller, Christian L
Published in arXiv.org (10.03.2022)
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Published in arXiv.org (10.03.2022)
Paper
Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features
Lisa Barros De Andrade E Sousa, Jonkers, Iris, Syx, Laurene, Chaumell, Julie, Picard, Christel, et, Benjamin, Chong-Jian, Chen, Lis, John T, Heard, Edith, Schulz, Edda G, Marsico, Annalisa
Published in bioRxiv (03.01.2019)
Published in bioRxiv (03.01.2019)
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Paper