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Ecological patterns of seed microbiome diversity, transmission, and assembly
Shade, Ashley, Jacques, Marie-Agnès, Barret, Matthieu
Published in Current opinion in microbiology (01.06.2017)
Published in Current opinion in microbiology (01.06.2017)
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rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing
Ogier, Jean-Claude, Pagès, Sylvie, Galan, Maxime, Barret, Matthieu, Gaudriault, Sophie
Published in BMC microbiology (29.07.2019)
Published in BMC microbiology (29.07.2019)
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Emergence Shapes the Structure of the Seed Microbiota
Barret, Matthieu, Briand, Martial, Bonneau, Sophie, Préveaux, Anne, Valière, Sophie, Bouchez, Olivier, Hunault, Gilles, Simoneau, Philippe, Jacques, Marie-Agnès
Published in Applied and Environmental Microbiology (01.02.2015)
Published in Applied and Environmental Microbiology (01.02.2015)
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Insect pollination: an ecological process involved in the assembly of the seed microbiota
Prado, Alberto, Marolleau, Brice, Vaissière, Bernard E., Barret, Matthieu, Torres-Cortes, Gloria
Published in Scientific reports (27.02.2020)
Published in Scientific reports (27.02.2020)
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Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat
Kerdraon, Lydie, Barret, Matthieu, Laval, Valérie, Suffert, Frédéric
Published in Microbiome (30.08.2019)
Published in Microbiome (30.08.2019)
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Terroir is a key driver of seed-associated microbial assemblages
Klaedtke, Stephanie, Jacques, Marie-Agnès, Raggi, Lorenzo, Préveaux, Anne, Bonneau, Sophie, Negri, Valeria, Chable, Véronique, Barret, Matthieu
Published in Environmental microbiology (01.06.2016)
Published in Environmental microbiology (01.06.2016)
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Temporal dynamics of bacterial communities during seed development and maturation
Chesneau, Guillaume, Torres-Cortes, Gloria, Briand, Martial, Darrasse, Armelle, Preveaux, Anne, Marais, Coralie, Jacques, Marie-Agnès, Shade, Ashley, Barret, Matthieu
Published in FEMS microbiology ecology (01.12.2020)
Published in FEMS microbiology ecology (01.12.2020)
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Single Seed Microbiota: Assembly and Transmission from Parent Plant to Seedling
Chesneau, Guillaume, Laroche, Béatrice, Préveaux, Anne, Marais, Coralie, Briand, Martial, Marolleau, Brice, Simonin, Marie, Barret, Matthieu
Published in mBio (20.12.2022)
Published in mBio (20.12.2022)
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Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods
Michel, Elisa, Monfort, Clarisse, Deffrasnes, Marion, Guezenec, Stéphane, Lhomme, Emilie, Barret, Matthieu, Sicard, Delphine, Dousset, Xavier, Onno, Bernard
Published in International journal of food microbiology (19.12.2016)
Published in International journal of food microbiology (19.12.2016)
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Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence
Torres-Cortés, Gloria, Bonneau, Sophie, Bouchez, Olivier, Genthon, Clémence, Briand, Martial, Jacques, Marie-Agnès, Barret, Matthieu
Published in Frontiers in plant science (29.06.2018)
Published in Frontiers in plant science (29.06.2018)
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In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana
Bartoli, Claudia, Frachon, Léa, Barret, Matthieu, Rigal, Mylène, Huard-Chauveau, Carine, Mayjonade, Baptiste, Zanchetta, Catherine, Bouchez, Olivier, Roby, Dominique, Carrère, Sébastien, Roux, Fabrice
Published in The ISME Journal (01.08.2018)
Published in The ISME Journal (01.08.2018)
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Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens
Merda, Déborah, Briand, Martial, Bosis, Eran, Rousseau, Céline, Portier, Perrine, Barret, Matthieu, Jacques, Marie‐Agnès, Fischer‐Le Saux, Marion
Published in Molecular ecology (01.11.2017)
Published in Molecular ecology (01.11.2017)
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Transmission of Seed and Soil Microbiota to Seedling
Rochefort, Aude, Simonin, Marie, Marais, Coralie, Guillerm-Erckelboudt, Anne-Yvonne, Barret, Matthieu, Sarniguet, Alain
Published in mSystems (29.06.2021)
Published in mSystems (29.06.2021)
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Stable, multigenerational transmission of the bean seed microbiome despite abiotic stress
Sulesky-Grieb, Abby, Simonin, Marie, Bintarti, A. Fina, Marolleau, Brice, Barret, Matthieu, Shade, Ashley
Published in mSystems (19.11.2024)
Published in mSystems (19.11.2024)
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Deep-learning-ready RGB-depth images of seedling development
Mercier, Félix, Couasnet, Geoffroy, El Ghaziri, Angelina, Bouhlel, Nizar, Sarniguet, Alain, Marchi, Muriel, Barret, Matthieu, Rousseau, David
Published in Plant methods (11.02.2025)
Published in Plant methods (11.02.2025)
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T6SS-mediated competition by Stenotrophomonas rhizophila shapes seed-borne bacterial communities and seed-to-seedling transmission dynamics
Garin, Tiffany, Brault, Agathe, Marais, Coralie, Briand, Martial, Préveaux, Anne, Bonneau, Sophie, Simonin, Marie, Barret, Matthieu, Sarniguet, Alain
Published in mSystems (16.07.2025)
Published in mSystems (16.07.2025)
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Elucidating the interplay between metabolites and microorganisms in the spermosphere of common bean ( Phaseolus vulgaris L.) seeds
Saccaram, Chandrodhay, Simonin, Marie, Boutet, Stéphanie, Brosse, Céline, Peng, Shuang, François, Tracy, Collet, Boris, Perreau, François, Sourdeval, Delphine, Marais, Coralie, Barret, Matthieu, Rajjou, Loïc, Corso, Massimiliano
Published in mSystems (19.08.2025)
Published in mSystems (19.08.2025)
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Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies
Alegria Terrazas, Rodrigo, Robertson-Albertyn, Senga, Corral, Aileen Mary, Escudero-Martinez, Carmen, Kapadia, Rumana, Balbirnie-Cumming, Katharin, Morris, Jenny, Hedley, Pete E., Barret, Matthieu, Torres-Cortes, Gloria, Paterson, Eric, Baggs, Elizabeth M., Abbott, James, Bulgarelli, Davide
Published in mSystems (20.12.2022)
Published in mSystems (20.12.2022)
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Honey bees change the microbiota of pollen
Prado, Alberto, Barret, Matthieu, Vaissière, Bernard E., Torres-Cortes, Gloria
Published in Botanical sciences (01.01.2023)
Published in Botanical sciences (01.01.2023)
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