Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
Chen, Xiaoyu, Schulz-Trieglaff, Ole, Shaw, Richard, Barnes, Bret, Schlesinger, Felix, Källberg, Morten, Cox, Anthony J, Kruglyak, Semyon, Saunders, Christopher T
Published in Bioinformatics (15.04.2016)
Published in Bioinformatics (15.04.2016)
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Journal Article
A mammalian methylation array for profiling methylation levels at conserved sequences
Arneson, Adriana, Haghani, Amin, Thompson, Michael J, Pellegrini, Matteo, Kwon, Soo Bin, Vu, Ha, Maciejewski, Emily, Yao, Mingjia, Li, Caesar Z, Lu, Ake T, Morselli, Marco, Rubbi, Liudmilla, Barnes, Bret, Hansen, Kasper D, Zhou, Wanding, Breeze, Charles E, Ernst, Jason, Horvath, Steve
Published in Nature communications (10.02.2022)
Published in Nature communications (10.02.2022)
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Journal Article
Host methylation predicts SARS-CoV-2 infection and clinical outcome
Konigsberg, Iain R, Barnes, Bret, Campbell, Monica, Davidson, Elizabeth, Zhen, Yingfei, Pallisard, Olivia, Boorgula, Meher Preethi, Cox, Corey, Nandy, Debmalya, Seal, Souvik, Crooks, Kristy, Sticca, Evan, Harrison, Genelle F, Hopkinson, Andrew, Vest, Alexis, Arnold, Cosby G, Kahn, Michael G, Kao, David P, Peterson, Brett R, Wicks, Stephen J, Ghosh, Debashis, Horvath, Steve, Zhou, Wanding, Mathias, Rasika A, Norman, Paul J, Porecha, Rishi, Yang, Ivana V, Gignoux, Christopher R, Monte, Andrew A, Taye, Alem, Barnes, Kathleen C
Published in Communications medicine (26.10.2021)
Published in Communications medicine (26.10.2021)
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Journal Article
Survey of Culture, GoldenGate Assay, Universal Biosensor Assay, and 16S rRNA Gene Sequencing as Alternative Methods of Bacterial Pathogen Detection
Lindsay, Brianna, Pop, Mihai, Antonio, Martin, Walker, Alan W, Mai, Volker, Ahmed, Dilruba, Oundo, Joseph, Tamboura, Boubou, Panchalingam, Sandra, Levine, Myron M, Kotloff, Karen, Li, Shan, Magder, Laurence S, Paulson, Joseph N, Liu, Bo, Ikumapayi, Usman, Ebruke, Chinelo, Dione, Michel, Adeyemi, Mitchell, Rance, Richard, Stares, Mark D, Ukhanova, Maria, Barnes, Bret, Lewis, Ian, Ahmed, Firoz, Alam, Meer Taifur, Amin, Ruhul, Siddiqui, Sabbir, Ochieng, John B, Ouma, Emmanuel, Juma, Jane, Mailu, Eunice, Omore, Richard, O'Reilly, Ciara E, Hannis, James, Manalili, Sheri, Deleon, Jonna, Yasuda, Irene, Blyn, Lawrence, Ranken, Raymond, Li, Feng, Housley, Roberta, Ecker, David J, Hossain, M Anowar, Breiman, Robert F, Morris, J Glenn, McDaniel, Timothy K, Parkhill, Julian, Saha, Debasish, Sampath, Rangarajan, Stine, O Colin, Nataro, James P
Published in Journal of Clinical Microbiology (01.10.2013)
Published in Journal of Clinical Microbiology (01.10.2013)
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Journal Article
Highly sensitive and specific microRNA expression profiling using BeadArray technology
Chen, Jing, Lozach, Jean, Garcia, Eliza Wickham, Barnes, Bret, Luo, Shujun, Mikoulitch, Ivan, Zhou, Lixin, Schroth, Gary, Fan, Jian-Bing
Published in Nucleic acids research (01.08.2008)
Published in Nucleic acids research (01.08.2008)
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Journal Article
High density DNA methylation array with single CpG site resolution
Bibikova, Marina, Barnes, Bret, Tsan, Chan, Ho, Vincent, Klotzle, Brandy, Le, Jennie M., Delano, David, Zhang, Lu, Schroth, Gary P., Gunderson, Kevin L., Fan, Jian-Bing, Shen, Richard
Published in Genomics (San Diego, Calif.) (01.10.2011)
Published in Genomics (San Diego, Calif.) (01.10.2011)
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Journal Article
Image Quality Evaluation in Dual-Energy CT of the Chest, Abdomen, and Pelvis in Obese Patients With Deep Learning Image Reconstruction
Fair, Eric, Profio, Mark, Kulkarni, Naveen, Laviolette, Peter S, Barnes, Bret, Bobholz, Samuel, Levenhagen, Maureen, Ausman, Robin, Griffin, Michael O, Duvnjak, Petar, Zorn, Adam P, Foley, W Dennis
Published in Journal of computer assisted tomography (01.07.2022)
Published in Journal of computer assisted tomography (01.07.2022)
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Journal Article
DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse
Zhou, Wanding, Hinoue, Toshinori, Barnes, Bret, Mitchell, Owen, Iqbal, Waleed, Lee, Sol Moe, Foy, Kelly K., Lee, Kwang-Ho, Moyer, Ethan J., VanderArk, Alexandra, Koeman, Julie M., Ding, Wubin, Kalkat, Manpreet, Spix, Nathan J., Eagleson, Bryn, Pospisilik, John Andrew, Szabó, Piroska E., Bartolomei, Marisa S., Vander Schaaf, Nicole A., Kang, Liang, Wiseman, Ashley K., Jones, Peter A., Krawczyk, Connie M., Adams, Marie, Porecha, Rishi, Chen, Brian H., Shen, Hui, Laird, Peter W.
Published in Cell genomics (13.07.2022)
Published in Cell genomics (13.07.2022)
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Journal Article
호흡기 병원체를 진단하는 방법 및 COVID-19 관련 결과를 예측하는 방법
MATHIAS RASIKA, YANG IVANA, NORMAN PAUL, BARNES BRET, TAYE ALEM, BARNES KATHLEEN, GIGNOUX CHRISTOPHER, PORECHA RISHI, PETERSON BRETT
Year of Publication 20.03.2023
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Year of Publication 20.03.2023
Patent
Genome-wide DNA methylation profiling using Infinium® assay
Bibikova, Marina, Le, Jennie, Barnes, Bret, Saedinia-Melnyk, Shadi, Zhou, Lixin, Shen, Richard, Gunderson, Kevin L
Published in Epigenomics (01.10.2009)
Published in Epigenomics (01.10.2009)
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Journal Article
A newly developed technique involving the optimization of flow velocity compensation for lower extremity CT angiography
Zhang, Lei, Xu, Dong, Li, KunCheng, Jin, ErHu, Barnes, Bret
Published in Chinese science bulletin (01.06.2013)
Published in Chinese science bulletin (01.06.2013)
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Journal Article
Host methylation predicts SARS-CoV-2 infection and clinical outcome
Konigsberg, Iain R, Barnes, Bret, Campbell, Monica, Davidson, Elizabeth, Zhen, Yingfei, Pallisard, Olivia, Boorgula, Meher Preethi, Cox, Corey, Nandy, Debmalya, Seal, Souvik, Crooks, Kristy, Sticca, Evan, Harrison, Genelle F, Hopkinson, Andrew, Vest, Alexis, Arnold, Cosby G, Kahn, Michael G, Kao, David P, Peterson, Brett R, Wicks, Stephen J, Ghosh, Debashis, Horvath, Steve, Zhou, Wanding, Mathias, Rasika A, Norman, Paul J, Porecha, Rishi, Yang, Ivana V, Gignoux, Christopher R, Monte, Andrew A, Taye, Alem, Barnes, Kathleen C
Published in Communications medicine (26.10.2021)
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Published in Communications medicine (26.10.2021)
Journal Article
Abstract LB-176: A novel high density DNA methylation array with single CpG site resolution
Bibikova, Marina, Barnes, Bret, Tsan, Chan, Ho, Vincent, Klotzle, Brandy, Le, Jennie M., Delano, David, Gunderson, Kevin L., Fan, Jian-Bing, Shen, Richard
Published in Cancer research (Chicago, Ill.) (15.04.2011)
Published in Cancer research (Chicago, Ill.) (15.04.2011)
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Journal Article
High density DNA methylation array with single CpG site resolution: New Genomic Technologies and Applications
BIBIKOVA, Marina, BARNES, Bret, FAN, Jian-Bing, SHEN, Richard, TSAN, Chan, HO, Vincent, KLOTZLE, Brandy, LE, Jennie M, DELANO, David, LU ZHANG, SCHROTH, Gary P, GUNDERSON, Kevin L
Published in Genomics (San Diego, Calif.) (2011)
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Published in Genomics (San Diego, Calif.) (2011)
Journal Article
Genome-wide DNA methylation profiling using Infinium
Bibikova, Marina, Le, Jennie, Barnes, Bret, Saedinia-Melnyk, Shadi, Zhou, Lixin, Shen, Richard, Gunderson, Kevin L
Published in Epigenomics (01.10.2009)
Published in Epigenomics (01.10.2009)
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Journal Article
MSA: scalable DNA methylation screening BeadChip for high-throughput trait association studies
Goldberg, David C, Cloud, Cameron, Lee, Sol Moe, Barnes, Bret, Gruber, Steven, Kim, Elliot, Pottekat, Anita, Westphal, Max, McAuliffe, Luana, Majournie, Elisa, KalayilManian, Manesh, Zhu, Qingdi, Tran, Christine, Hansen, Mark, Parker, Jared B, Kohli, Rahul M, Porecha, Rishi, Renke, Nicole, Zhou, Wanding
Published in bioRxiv : the preprint server for biology (21.05.2024)
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Published in bioRxiv : the preprint server for biology (21.05.2024)
Journal Article
DNA METHYLATION MEASUREMENT FOR MAMMALS BASED ON CONSERVED LOCI
HORVATH, Stefan, ERNST, Jason, ARNESON, Adriana, Cristina, BARNES, Bret
Year of Publication 19.10.2022
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Year of Publication 19.10.2022
Patent
GENOTYPING METHODS AND SYSTEMS
OSTROW, Andrew, SHANNON, Karen, NGUYEN, Thu, CHIN, Brian, HANSON, Sarah, DAVIS, Carey, BARNES, Bret
Year of Publication 11.04.2024
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Year of Publication 11.04.2024
Patent
DNA METHYLATION MEASUREMENT FOR MAMMALS BASED ON CONSERVED LOCI
Horvath, Stefan, Ernst, Jason, Arneson, Adriana Cristina, Barnes, Bret
Year of Publication 24.03.2022
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Year of Publication 24.03.2022
Patent