Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
Bansal, Mukul S, Alm, Eric J, Kellis, Manolis
Published in Bioinformatics (Oxford, England) (15.06.2012)
Published in Bioinformatics (Oxford, England) (15.06.2012)
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Journal Article
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss
Bansal, Mukul S, Kellis, Manolis, Kordi, Misagh, Kundu, Soumya
Published in Bioinformatics (15.09.2018)
Published in Bioinformatics (15.09.2018)
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Journal Article
Assessing the accuracy of phylogenetic rooting methods on prokaryotic gene families
Wade, Taylor, Rangel, L Thiberio, Kundu, Soumya, Fournier, Gregory P, Bansal, Mukul S
Published in PloS one (15.05.2020)
Published in PloS one (15.05.2020)
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Journal Article
virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2
Zaman, Sumaira, Sledzieski, Samuel, Berger, Bonnie, Wu, Yi-Chieh, Bansal, Mukul S
Published in Journal of computational biology (01.01.2023)
Published in Journal of computational biology (01.01.2023)
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Journal Article
Systematic Detection of Large-Scale Multigene Horizontal Transfer in Prokaryotes
Kloub, Lina, Gosselin, Sean, Fullmer, Matthew, Graf, Joerg, Gogarten, Johann Peter, Bansal, Mukul S
Published in Molecular biology and evolution (19.05.2021)
Published in Molecular biology and evolution (19.05.2021)
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Journal Article
iGTP: a software package for large-scale gene tree parsimony analysis
Chaudhary, Ruchi, Bansal, Mukul S, Wehe, André, Fernández-Baca, David, Eulenstein, Oliver
Published in BMC bioinformatics (23.11.2010)
Published in BMC bioinformatics (23.11.2010)
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Journal Article
TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees
Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis
Published in Systematic biology (01.01.2013)
Published in Systematic biology (01.01.2013)
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Journal Article
TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread
Dhar, Saurav, Zhang, Chengchen, Mandoiu, Ion I., Bansal, Mukul S.
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.01.2022)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.01.2022)
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Journal Article
Improved gene tree error correction in the presence of horizontal gene transfer
Bansal, Mukul S, Wu, Yi-Chieh, Alm, Eric J, Kellis, Manolis
Published in Bioinformatics (15.04.2015)
Published in Bioinformatics (15.04.2015)
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Journal Article