Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming
Tiwari, Neha, Tiwari, Vijay K., Waldmeier, Lorenz, Balwierz, Piotr J., Arnold, Phil, Pachkov, Mikhail, Meyer-Schaller, Nathalie, Schübeler, Dirk, van Nimwegen, Erik, Christofori, Gerhard
Published in Cancer cell (10.06.2013)
Published in Cancer cell (10.06.2013)
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ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
Balwierz, Piotr J, Pachkov, Mikhail, Arnold, Phil, Gruber, Andreas J, Zavolan, Mihaela, van Nimwegen, Erik
Published in Genome research (01.05.2014)
Published in Genome research (01.05.2014)
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Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing
Nepal, Chirag, Hadzhiev, Yavor, Balwierz, Piotr, Tarifeño-Saldivia, Estefanía, Cardenas, Ryan, Wragg, Joseph W, Suzuki, Ana-Maria, Carninci, Piero, Peers, Bernard, Lenhard, Boris, Andersen, Jesper B, Müller, Ferenc
Published in Nature communications (10.01.2020)
Published in Nature communications (10.01.2020)
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SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
Pachkov, Mikhail, Balwierz, Piotr J, Arnold, Phil, Ozonov, Evgeniy, van Nimwegen, Erik
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium
Meier-Abt, Fabienne, Milani, Emanuela, Roloff, Tim, Brinkhaus, Heike, Duss, Stephan, Meyer, Dominique S, Klebba, Ina, Balwierz, Piotr J, van Nimwegen, Erik, Bentires-Alj, Mohamed
Published in Breast cancer research : BCR (29.04.2013)
Published in Breast cancer research : BCR (29.04.2013)
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Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop
Aceto, Nicola, Sausgruber, Nina, Brinkhaus, Heike, Gaidatzis, Dimos, Martiny-Baron, Georg, Mazzarol, Giovanni, Confalonieri, Stefano, Quarto, Micaela, Hu, Guang, Balwierz, Piotr J, Pachkov, Mikhail, Elledge, Stephen J, van Nimwegen, Erik, Stadler, Michael B, Bentires-Alj, Mohamed
Published in Nature medicine (01.04.2012)
Published in Nature medicine (01.04.2012)
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Adipose Tissue MicroRNAs as Regulators of CCL2 Production in Human Obesity
ARNER, Erik, MEJHERT, Niklas, DAHLMAN-WRIGHT, Karin, TANTI, Jean-François, HAYASHIZAKI, Yoshihide, RYDEN, Mikael, DAHLMAN, Ingrid, NIMWEGEN, Erik Van, DAUB, Carsten O, ARNER, Peter, KULYTE, Agne, BALWIERZ, Piotr J, PACHKOV, Mikhail, CORMONT, Mireille, LORENTE-CEBRIAN, Silvia, EHRLUND, Anna, LAURENCIKIENE, Jurga, HEDEN, Per
Published in Diabetes (New York, N.Y.) (01.08.2012)
Published in Diabetes (New York, N.Y.) (01.08.2012)
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The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing
Kishore, Shivendra, Khanna, Amit, Zhang, Zhaiyi, Hui, Jingyi, Balwierz, Piotr J., Stefan, Mihaela, Beach, Carol, Nicholls, Robert D., Zavolan, Mihaela, Stamm, Stefan
Published in Human molecular genetics (01.04.2010)
Published in Human molecular genetics (01.04.2010)
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Transcription and enhancer profiling in human monocyte subsets
Schmidl, Christian, Renner, Kathrin, Peter, Katrin, Eder, Ruediger, Lassmann, Timo, Balwierz, Piotr J., Itoh, Masayoshi, Nagao-Sato, Sayaka, Kawaji, Hideya, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Andreesen, Reinhard, Hume, David A., Hoffmann, Petra, Forrest, Alistair R.R., Kreutz, Marina P., Edinger, Matthias, Rehli, Michael
Published in Blood (24.04.2014)
Published in Blood (24.04.2014)
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Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome
Hutzinger, Roland, Feederle, Regina, Mrazek, Jan, Schiefermeier, Natalia, Balwierz, Piotr J, Zavolan, Mihaela, Polacek, Norbert, Delecluse, Henri-Jacques, Hüttenhofer, Alexander
Published in PLoS pathogens (01.08.2009)
Published in PLoS pathogens (01.08.2009)
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Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics
López-Pérez, Ana R, Balwierz, Piotr J, Lenhard, Boris, Muller, Ferenc, Wardle, Fiona C, Manfroid, Isabelle, Voz, Marianne L, Peers, Bernard
Published in Scientific reports (22.11.2021)
Published in Scientific reports (22.11.2021)
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Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization
D’Orazio, Fabio M., Balwierz, Piotr J., González, Ada Jimenez, Guo, Yixuan, Hernández-Rodríguez, Benjamín, Wheatley, Lucy, Jasiulewicz, Aleksandra, Hadzhiev, Yavor, Vaquerizas, Juan M., Cairns, Bradley, Lenhard, Boris, Müller, Ferenc
Published in Developmental cell (08.03.2021)
Published in Developmental cell (08.03.2021)
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The Corepressor NCoR1 Antagonizes PGC-1α and Estrogen-Related Receptor α in the Regulation of Skeletal Muscle Function and Oxidative Metabolism
Pérez-Schindler, Joaquín, Summermatter, Serge, Salatino, Silvia, Zorzato, Francesco, Beer, Markus, Balwierz, Piotr J., van Nimwegen, Erik, Feige, Jérôme N., Auwerx, Johan, Handschin, Christoph
Published in Molecular and Cellular Biology (01.12.2012)
Published in Molecular and Cellular Biology (01.12.2012)
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Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
Balwierz, Piotr J, Carninci, Piero, Daub, Carsten O, Kawai, Jun, Hayashizaki, Yoshihide, Van Belle, Werner, Beisel, Christian, van Nimwegen, Erik
Published in Genome biology (22.07.2009)
Published in Genome biology (22.07.2009)
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Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
Arnold, Phil, Schöler, Anne, Pachkov, Mikhail, Balwierz, Piotr J, Jørgensen, Helle, Stadler, Michael B, van Nimwegen, Erik, Schübeler, Dirk
Published in Genome research (01.01.2013)
Published in Genome research (01.01.2013)
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The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations
Schmidl, Christian, Hansmann, Leo, Lassmann, Timo, Balwierz, Piotr J., Kawaji, Hideya, Itoh, Masayoshi, Kawai, Jun, Nagao-Sato, Sayaka, Suzuki, Harukazu, Andreesen, Reinhard, Hayashizaki, Yoshihide, Forrest, Alistair R.R., Carninci, Piero, Hoffmann, Petra, Edinger, Matthias, Rehli, Michael
Published in Blood (24.04.2014)
Published in Blood (24.04.2014)
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Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways
Gruber, Andreas J, Grandy, William A, Balwierz, Piotr J, Dimitrova, Yoana A, Pachkov, Mikhail, Ciaudo, Constance, Nimwegen, Erik van, Zavolan, Mihaela
Published in Nucleic acids research (18.08.2014)
Published in Nucleic acids research (18.08.2014)
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FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
Severin, Jessica, Waterhouse, Andrew M, Kawaji, Hideya, Lassmann, Timo, van Nimwegen, Erik, Balwierz, Piotr J, de Hoon, Michiel Jl, Hume, David A, Carninci, Piero, Hayashizaki, Yoshihide, Suzuki, Harukazu, Daub, Carsten O, Forrest, Alistair Rr
Published in Genome biology (01.01.2009)
Published in Genome biology (01.01.2009)
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Identification of novel potential interaction partners of UDP-galactose (SLC35A2), UDP-N-acetylglucosamine (SLC35A3) and an orphan (SLC35A4) nucleotide sugar transporters
Wiktor, Maciej, Wiertelak, Wojciech, Maszczak-Seneczko, Dorota, Balwierz, Piotr Jan, Szulc, Bożena, Olczak, Mariusz
Published in Journal of proteomics (30.10.2021)
Published in Journal of proteomics (30.10.2021)
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Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Baranasic, Damir, Hörtenhuber, Matthias, Balwierz, Piotr J, Zehnder, Tobias, Mukarram, Abdul Kadir, Nepal, Chirag, Várnai, Csilla, Hadzhiev, Yavor, Jimenez-Gonzalez, Ada, Li, Nan, Wragg, Joseph, D'Orazio, Fabio M, Relic, Dorde, Pachkov, Mikhail, Díaz, Noelia, Hernández-Rodríguez, Benjamín, Chen, Zelin, Stoiber, Marcus, Dong, Michaël, Stevens, Irene, Ross, Samuel E, Eagle, Anne, Martin, Ryan, Obasaju, Oluwapelumi, Rastegar, Sepand, McGarvey, Alison C, Kopp, Wolfgang, Chambers, Emily, Wang, Dennis, Kim, Hyejeong R, Acemel, Rafael D, Naranjo, Silvia, Łapiński, Maciej, Chong, Vanessa, Mathavan, Sinnakaruppan, Peers, Bernard, Sauka-Spengler, Tatjana, Vingron, Martin, Carninci, Piero, Ohler, Uwe, Lacadie, Scott Allen, Burgess, Shawn M, Winata, Cecilia, van Eeden, Freek, Vaquerizas, Juan M, Gómez-Skarmeta, José Luis, Onichtchouk, Daria, Brown, Ben James, Bogdanovic, Ozren, van Nimwegen, Erik, Westerfield, Monte, Wardle, Fiona C, Daub, Carsten O, Lenhard, Boris, Müller, Ferenc
Published in Nature genetics (01.07.2022)
Published in Nature genetics (01.07.2022)
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