Accelerating in silico saturation mutagenesis using compressed sensing
Schreiber, Jacob, Nair, Surag, Balsubramani, Akshay, Kundaje, Anshul
Published in Bioinformatics (11.07.2022)
Published in Bioinformatics (11.07.2022)
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A genome-wide atlas of co-essential modules assigns function to uncharacterized genes
Wainberg, Michael, Kamber, Roarke A, Balsubramani, Akshay, Meyers, Robin M, Sinnott-Armstrong, Nasa, Hornburg, Daniel, Jiang, Lihua, Chan, Joanne, Jian, Ruiqi, Gu, Mingxin, Shcherbina, Anna, Dubreuil, Michael M, Spees, Kaitlyn, Meuleman, Wouter, Snyder, Michael P, Bassik, Michael C, Kundaje, Anshul
Published in Nature genetics (01.05.2021)
Published in Nature genetics (01.05.2021)
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Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease
Ameen, Mohamed, Sundaram, Laksshman, Shen, Mengcheng, Banerjee, Abhimanyu, Kundu, Soumya, Nair, Surag, Shcherbina, Anna, Gu, Mingxia, Wilson, Kitchener D., Varadarajan, Avyay, Vadgama, Nirmal, Balsubramani, Akshay, Wu, Joseph C., Engreitz, Jesse M., Farh, Kyle, Karakikes, Ioannis, Wang, Kevin C., Quertermous, Thomas, Greenleaf, William J., Kundaje, Anshul
Published in Cell (22.12.2022)
Published in Cell (22.12.2022)
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Representations of lipid nanoparticles using large language models for transfection efficiency prediction
Moayedpour, Saeed, Broadbent, Jonathan, Riahi, Saleh, Bailey, Michael, Vu Thu, Hoa, Dobchev, Dimitar, Balsubramani, Akshay, Nascimento Dos Santos, Ricardo, Kogler-Anele, Lorenzo, Corrochano-Navarro, Alejandro, Li, Sizhen, Ulloa Montoya, Fernando, Agarwal, Vikram, Bar-Joseph, Ziv, Jager, Sven
Published in Bioinformatics (Oxford, England) (01.07.2024)
Published in Bioinformatics (Oxford, England) (01.07.2024)
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CodonBERT large language model for mRNA vaccines
Li, Sizhen, Moayedpour, Saeed, Li, Ruijiang, Bailey, Michael, Riahi, Saleh, Kogler-Anele, Lorenzo, Miladi, Milad, Miner, Jacob, Pertuy, Fabien, Zheng, Dinghai, Wang, Jun, Balsubramani, Akshay, Tran, Khang, Zacharia, Minnie, Wu, Monica, Gu, Xiaobo, Clinton, Ryan, Asquith, Carla, Skaleski, Joseph, Boeglin, Lianne, Chivukula, Sudha, Dias, Anusha, Strugnell, Tod, Montoya, Fernando Ulloa, Agarwal, Vikram, Bar-Joseph, Ziv, Jager, Sven
Published in Genome research (01.07.2024)
Published in Genome research (01.07.2024)
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Linking Generative Adversarial Learning and Binary Classification
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Sequential Nonparametric Testing with the Law of the Iterated Logarithm
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