Correcting inter‐scan motion artifacts in quantitative R1 mapping at 7T
Balbastre, Yaël, Aghaeifar, Ali, Corbin, Nadège, Brudfors, Mikael, Ashburner, John, Callaghan, Martina F.
Published in Magnetic resonance in medicine (01.07.2022)
Published in Magnetic resonance in medicine (01.07.2022)
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Journal Article
SynthSR: A public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry
Iglesias, Juan E, Billot, Benjamin, Balbastre, Yaël, Magdamo, Colin, Arnold, Steven E, Das, Sudeshna, Edlow, Brian L, Alexander, Daniel C, Golland, Polina, Fischl, Bruce
Published in Science advances (03.02.2023)
Published in Science advances (03.02.2023)
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Journal Article
Assessment of simplified methods for quantification of [18F]-DPA-714 using 3D whole-brain TSPO immunohistochemistry in a non-human primate
Van Camp, Nadja, Balbastre, Yaël, Herard, Anne-Sophie, Lavisse, Sonia, Tauber, Clovis, Wimberley, Catriona, Guillermier, Martine, Berniard, Aurélie, Gipchtein, Pauline, Jan, Caroline, Badin, Romina Aron, Delzescaux, Thierry, Hantraye, Philippe, Bonvento, Gilles
Published in Journal of cerebral blood flow and metabolism (01.05.2020)
Published in Journal of cerebral blood flow and metabolism (01.05.2020)
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Journal Article
Automated Individualization of Size-Varying and Touching Neurons in Macaque Cerebral Microscopic Images
You, Zhenzhen, Balbastre, Yaël, Bouvier, Clément, Hérard, Anne-Sophie, Gipchtein, Pauline, Hantraye, Philippe, Jan, Caroline, Souedet, Nicolas, Delzescaux, Thierry
Published in Frontiers in neuroanatomy (17.12.2019)
Published in Frontiers in neuroanatomy (17.12.2019)
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Journal Article
Primatologist: A modular segmentation pipeline for macaque brain morphometry
Balbastre, Yaël, Rivière, Denis, Souedet, Nicolas, Fischer, Clara, Hérard, Anne-Sophie, Williams, Susannah, Vandenberghe, Michel E., Flament, Julien, Aron-Badin, Romina, Hantraye, Philippe, Mangin, Jean-François, Delzescaux, Thierry
Published in NeuroImage (Orlando, Fla.) (15.11.2017)
Published in NeuroImage (Orlando, Fla.) (15.11.2017)
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Journal Article
Machine learning of dissection photographs and surface scanning for quantitative 3D neuropathology
Gazula, Harshvardhan, Tregidgo, Henry FJ, Billot, Benjamin, Balbastre, Yael, Williams-Ramirez, Jonathan, Herisse, Rogeny, Deden-Binder, Lucas J, Casamitjana, Adria, Melief, Erica J, Latimer, Caitlin S, Kilgore, Mitchell D, Montine, Mark, Robinson, Eleanor, Blackburn, Emily, Marshall, Michael S, Connors, Theresa R, Oakley, Derek H, Frosch, Matthew P, Young, Sean I, Van Leemput, Koen, Dalca, Adrian V, Fischl, Bruce, MacDonald, Christine L, Keene, C Dirk, Hyman, Bradley T, Iglesias, Juan E
Published in eLife (19.06.2024)
Published in eLife (19.06.2024)
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Journal Article
Impairment of Glycolysis-Derived l-Serine Production in Astrocytes Contributes to Cognitive Deficits in Alzheimer’s Disease
Le Douce, Juliette, Maugard, Marianne, Veran, Julien, Matos, Marco, Jégo, Pierrick, Vigneron, Pierre-Antoine, Faivre, Emilie, Toussay, Xavier, Vandenberghe, Michel, Balbastre, Yaël, Piquet, Juliette, Guiot, Elvire, Tran, Nguyet Thuy, Taverna, Myriam, Marinesco, Stéphane, Koyanagi, Ayumi, Furuya, Shigeki, Gaudin-Guérif, Mylène, Goutal, Sébastien, Ghettas, Aurélie, Pruvost, Alain, Bemelmans, Alexis-Pierre, Gaillard, Marie-Claude, Cambon, Karine, Stimmer, Lev, Sazdovitch, Véronique, Duyckaerts, Charles, Knott, Graham, Hérard, Anne-Sophie, Delzescaux, Thierry, Hantraye, Philippe, Brouillet, Emmanuel, Cauli, Bruno, Oliet, Stéphane H.R., Panatier, Aude, Bonvento, Gilles
Published in Cell metabolism (03.03.2020)
Published in Cell metabolism (03.03.2020)
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Journal Article
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast
Iglesias, Juan Eugenio, Billot, Benjamin, Balbastre, Yaël, Tabari, Azadeh, Conklin, John, Gilberto González, R., Alexander, Daniel C., Golland, Polina, Edlow, Brian L., Fischl, Bruce
Published in NeuroImage (Orlando, Fla.) (15.08.2021)
Published in NeuroImage (Orlando, Fla.) (15.08.2021)
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Journal Article
An algorithm for learning shape and appearance models without annotations
Ashburner, John, Brudfors, Mikael, Bronik, Kevin, Balbastre, Yaël
Published in Medical image analysis (01.07.2019)
Published in Medical image analysis (01.07.2019)
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Journal Article
Factorisation-Based Image Labelling
Yan, Yu, Balbastre, Yaël, Brudfors, Mikael, Ashburner, John
Published in Frontiers in neuroscience (17.01.2022)
Published in Frontiers in neuroscience (17.01.2022)
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Journal Article
Model-based multi-parameter mapping
Balbastre, Yaël, Brudfors, Mikael, Azzarito, Michela, Lambert, Christian, Callaghan, Martina F., Ashburner, John
Published in Medical image analysis (01.10.2021)
Published in Medical image analysis (01.10.2021)
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Journal Article
Simultaneous voxel‐wise analysis of brain and spinal cord morphometry and microstructure within the SPM framework
Azzarito, Michela, Kyathanahally, Sreenath P., Balbastre, Yaël, Seif, Maryam, Blaiotta, Claudia, Callaghan, Martina F., Ashburner, John, Freund, Patrick
Published in Human brain mapping (01.01.2021)
Published in Human brain mapping (01.01.2021)
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Journal Article
Voxel-Based Statistical Analysis of 3D Immunostained Tissue Imaging
Vandenberghe, Michel E, Souedet, Nicolas, Hérard, Anne-Sophie, Ayral, Anne-Marie, Letronne, Florent, Balbastre, Yaël, Sadouni, Elmahdi, Hantraye, Philippe, Dhenain, Marc, Frouin, Frédérique, Lambert, Jean-Charles, Delzescaux, Thierry
Published in Frontiers in neuroscience (15.11.2018)
Published in Frontiers in neuroscience (15.11.2018)
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Journal Article
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning
Hering, Alessa, Hansen, Lasse, Mok, Tony C. W., Chung, Albert C. S., Siebert, Hanna, Hager, Stephanie, Lange, Annkristin, Kuckertz, Sven, Heldmann, Stefan, Shao, Wei, Vesal, Sulaiman, Rusu, Mirabela, Sonn, Geoffrey, Estienne, Theo, Vakalopoulou, Maria, Han, Luyi, Huang, Yunzhi, Yap, Pew-Thian, Brudfors, Mikael, Balbastre, Yael, Joutard, Samuel, Modat, Marc, Lifshitz, Gal, Raviv, Dan, Lv, Jinxin, Li, Qiang, Jaouen, Vincent, Visvikis, Dimitris, Fourcade, Constance, Rubeaux, Mathieu, Pan, Wentao, Xu, Zhe, Jian, Bailiang, De Benetti, Francesca, Wodzinski, Marek, Gunnarsson, Niklas, Sjolund, Jens, Grzech, Daniel, Qiu, Huaqi, Li, Zeju, Thorley, Alexander, Duan, Jinming, Grosbrohmer, Christoph, Hoopes, Andrew, Reinertsen, Ingerid, Xiao, Yiming, Landman, Bennett, Huo, Yuankai, Murphy, Keelin, Lessmann, Nikolas, van Ginneken, Bram, Dalca, Adrian V., Heinrich, Mattias P.
Published in IEEE transactions on medical imaging (01.03.2023)
Published in IEEE transactions on medical imaging (01.03.2023)
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Journal Article
Segmentation of supragranular and infragranular layers in ultra-high-resolution 7T ex vivo MRI of the human cerebral cortex
Zeng, Xiangrui, Puonti, Oula, Sayeed, Areej, Herisse, Rogeny, Mora, Jocelyn, Evancic, Kathryn, Varadarajan, Divya, Balbastre, Yael, Costantini, Irene, Scardigli, Marina, Ramazzotti, Josephine, DiMeo, Danila, Mazzamuto, Giacomo, Pesce, Luca, Brady, Niamh, Cheli, Franco, Saverio Pavone, Francesco, Hof, Patrick R, Frost, Robert, Augustinack, Jean, van der Kouwe, André, Eugenio Iglesias, Juan, Fischl, Bruce
Published in Cerebral cortex (New York, N.Y. 1991) (03.09.2024)
Published in Cerebral cortex (New York, N.Y. 1991) (03.09.2024)
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