Mutation Detection in Patients With Advanced Cancer by Universal Sequencing of Cancer-Related Genes in Tumor and Normal DNA vs Guideline-Based Germline Testing
Mandelker, Diana, Zhang, Liying, Kemel, Yelena, Stadler, Zsofia K, Joseph, Vijai, Zehir, Ahmet, Pradhan, Nisha, Arnold, Angela, Walsh, Michael F, Li, Yirong, Balakrishnan, Anoop R, Syed, Aijazuddin, Prasad, Meera, Nafa, Khedoudja, Carlo, Maria I, Cadoo, Karen A, Sheehan, Meg, Fleischut, Megan H, Salo-Mullen, Erin, Trottier, Magan, Lipkin, Steven M, Lincoln, Anne, Mukherjee, Semanti, Ravichandran, Vignesh, Cambria, Roy, Galle, Jesse, Abida, Wassim, Arcila, Marcia E, Benayed, Ryma, Shah, Ronak, Yu, Kenneth, Bajorin, Dean F, Coleman, Jonathan A, Leach, Steven D, Lowery, Maeve A, Garcia-Aguilar, Julio, Kantoff, Philip W, Sawyers, Charles L, Dickler, Maura N, Saltz, Leonard, Motzer, Robert J, O’Reilly, Eileen M, Scher, Howard I, Baselga, José, Klimstra, David S, Solit, David B, Hyman, David M, Berger, Michael F, Ladanyi, Marc, Robson, Mark E, Offit, Kenneth
Published in JAMA : the journal of the American Medical Association (05.09.2017)
Published in JAMA : the journal of the American Medical Association (05.09.2017)
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Journal Article
Detection of Hard Exudates Using Evolutionary Feature Selection in Retinal Fundus Images
Kadan, Anoop Balakrishnan, Subbian, Perumal Sankar
Published in Journal of medical systems (01.07.2019)
Published in Journal of medical systems (01.07.2019)
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Journal Article
Multi-objective load balancing in cloud infrastructure through fuzzy based decision making and genetic algorithm based optimization
George, Neema, Kadan, Anoop Balakrishnan, Vijayan, Vinodh P.
Published in IAES International Journal of Artificial Intelligence (01.06.2023)
Published in IAES International Journal of Artificial Intelligence (01.06.2023)
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Journal Article
Automatic diagnosis of diabetic retinopathy with the aid of adaptive average filtering with optimized deep convolutional neural network
Roshini, TV, Ravi, Ranjith V, Reema Mathew, A, Kadan, Anoop Balakrishnan, Subbian, Perumal Sankar
Published in International journal of imaging systems and technology (01.12.2020)
Published in International journal of imaging systems and technology (01.12.2020)
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Journal Article
O12: Clonal hematopoiesis-related variants confounding hereditary cancer testing: Results from matched tumor-normal sequencing of 26,329 cancer patients
Birsoy, Ozge, Rema, Anoop Balakrishnan, Rana, Satshil, Brannon, Rose, Syed, Aijazuddin, Mandelker, Diana
Published in Genetics in Medicine Open (2024)
Published in Genetics in Medicine Open (2024)
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Journal Article
Enhanced specificity of clinical high-sensitivity tumor mutation profiling in cell-free DNA via paired normal sequencing using MSK-ACCESS
Rose Brannon, A., Jayakumaran, Gowtham, Diosdado, Monica, Patel, Juber, Razumova, Anna, Hu, Yu, Meng, Fanli, Haque, Mohammad, Sadowska, Justyna, Murphy, Brian J., Baldi, Tessara, Johnson, Ian, Ptashkin, Ryan, Hasan, Maysun, Srinivasan, Preethi, Rema, Anoop Balakrishnan, Rijo, Ivelise, Agarunov, Aaron, Won, Helen, Perera, Dilmi, Brown, David N., Samoila, Aliaksandra, Jing, Xiaohong, Gedvilaite, Erika, Yang, Julie L., Stephens, Dennis P., Dix, Jenna-Marie, DeGroat, Nicole, Nafa, Khedoudja, Syed, Aijazuddin, Li, Alan, Lebow, Emily S., Bowman, Anita S., Ferguson, Donna C., Liu, Ying, Mata, Douglas A., Sharma, Rohit, Yang, Soo-Ryum, Bale, Tejus, Benhamida, Jamal K., Chang, Jason C., Dogan, Snjezana, Hameed, Meera R., Hechtman, Jaclyn F., Moung, Christine, Ross, Dara S., Vakiani, Efsevia, Vanderbilt, Chad M., Yao, JinJuan, Razavi, Pedram, Smyth, Lillian M., Chandarlapaty, Sarat, Iyer, Gopa, Abida, Wassim, Harding, James J., Krantz, Benjamin, O’Reilly, Eileen, Yu, Helena A., Li, Bob T., Rudin, Charles M., Diaz, Luis, Solit, David B., Arcila, Maria E., Ladanyi, Marc, Loomis, Brian, Tsui, Dana, Berger, Michael F., Zehir, Ahmet, Benayed, Ryma
Published in Nature communications (18.06.2021)
Published in Nature communications (18.06.2021)
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Journal Article
Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
Zehir, Ahmet, Benayed, Ryma, Shah, Ronak H, Syed, Aijazuddin, Middha, Sumit, Kim, Hyunjae R, Srinivasan, Preethi, Gao, Jianjiong, Chakravarty, Debyani, Devlin, Sean M, Hellmann, Matthew D, Barron, David A, Schram, Alison M, Hameed, Meera, Dogan, Snjezana, Ross, Dara S, Hechtman, Jaclyn F, DeLair, Deborah F, Yao, JinJuan, Mandelker, Diana L, Cheng, Donavan T, Chandramohan, Raghu, Mohanty, Abhinita S, Ptashkin, Ryan N, Jayakumaran, Gowtham, Prasad, Meera, Syed, Mustafa H, Rema, Anoop Balakrishnan, Liu, Zhen Y, Nafa, Khedoudja, Borsu, Laetitia, Sadowska, Justyna, Casanova, Jacklyn, Bacares, Ruben, Kiecka, Iwona J, Razumova, Anna, Son, Julie B, Stewart, Lisa, Baldi, Tessara, Mullaney, Kerry A, Al-Ahmadie, Hikmat, Vakiani, Efsevia, Abeshouse, Adam A, Penson, Alexander V, Jonsson, Philip, Camacho, Niedzica, Chang, Matthew T, Won, Helen H, Gross, Benjamin E, Kundra, Ritika, Heins, Zachary J, Chen, Hsiao-Wei, Phillips, Sarah, Zhang, Hongxin, Wang, Jiaojiao, Ochoa, Angelica, Wills, Jonathan, Eubank, Michael, Thomas, Stacy B, Gardos, Stuart M, Reales, Dalicia N, Galle, Jesse, Durany, Robert, Cambria, Roy, Abida, Wassim, Cercek, Andrea, Feldman, Darren R, Gounder, Mrinal M, Hakimi, A Ari, Harding, James J, Iyer, Gopa, Janjigian, Yelena Y, Jordan, Emmet J, Kelly, Ciara M, Lowery, Maeve A, Morris, Luc G T, Omuro, Antonio M, Raj, Nitya, Razavi, Pedram, Shoushtari, Alexander N, Shukla, Neerav, Soumerai, Tara E, Varghese, Anna M, Yaeger, Rona, Coleman, Jonathan, Bochner, Bernard, Riely, Gregory J, Saltz, Leonard B, Scher, Howard I, Sabbatini, Paul J, Robson, Mark E, Klimstra, David S, Taylor, Barry S, Baselga, Jose, Schultz, Nikolaus, Hyman, David M, Arcila, Maria E, Solit, David B, Ladanyi, Marc, Berger, Michael F
Published in Nature medicine (01.06.2017)
Published in Nature medicine (01.06.2017)
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Journal Article
Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing
Ptashkin, Ryan N, Ewalt, Mark D, Jayakumaran, Gowtham, Kiecka, Iwona, Bowman, Anita S, Yao, JinJuan, Casanova, Jacklyn, Lin, Yun-Te David, Petrova-Drus, Kseniya, Mohanty, Abhinita S, Bacares, Ruben, Benhamida, Jamal, Rana, Satshil, Razumova, Anna, Vanderbilt, Chad, Balakrishnan Rema, Anoop, Rijo, Ivelise, Son-Garcia, Julie, de Bruijn, Ino, Zhu, Menglei, Lachhander, Sean, Wang, Wei, Haque, Mohammad S, Seshan, Venkatraman E, Wang, Jiajing, Liu, Ying, Nafa, Khedoudja, Borsu, Laetitia, Zhang, Yanming, Aypar, Umut, Suehnholz, Sarah P, Chakravarty, Debyani, Park, Jae H, Abdel-Wahab, Omar, Mato, Anthony R, Xiao, Wenbin, Roshal, Mikhail, Yabe, Mariko, Batlevi, Connie Lee, Giralt, Sergio, Salles, Gilles, Rampal, Raajit, Tallman, Martin, Stein, Eytan M, Younes, Anas, Levine, Ross L, Perales, Miguel-Angel, van den Brink, Marcel R M, Dogan, Ahmet, Ladanyi, Marc, Berger, Michael F, Brannon, A Rose, Benayed, Ryma, Zehir, Ahmet, Arcila, Maria E
Published in Nature communications (28.10.2023)
Published in Nature communications (28.10.2023)
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Journal Article
OncoTree: A Cancer Classification System for Precision Oncology
Kundra, Ritika, Zhang, Hongxin, Sheridan, Robert, Sirintrapun, Sahussapont Joseph, Wang, Avery, Ochoa, Angelica, Wilson, Manda, Gross, Benjamin, Sun, Yichao, Madupuri, Ramyasree, Satravada, Baby A, Reales, Dalicia, Vakiani, Efsevia, Al-Ahmadie, Hikmat A, Dogan, Ahmet, Arcila, Maria, Zehir, Ahmet, Maron, Steven, Berger, Michael F, Viaplana, Cristina, Janeway, Katherine, Ducar, Matthew, Sholl, Lynette, Dogan, Snjezana, Bedard, Philippe, Surrey, Lea F, Sanchez, Iker Huerga, Syed, Aijaz, Rema, Anoop Balakrishnan, Chakravarty, Debyani, Suehnholz, Sarah, Nissan, Moriah, Iyer, Gopakumar V, Murali, Rajmohan, Bouvier, Nancy, Soslow, Robert A, Hyman, David, Younes, Anas, Intlekofer, Andrew, Harding, James J, Carvajal, Richard D, Sabbatini, Paul J, Abou-Alfa, Ghassan K, Morris, Luc, Janjigian, Yelena Y, Gallagher, Meighan M, Soumerai, Tara A, Mellinghoff, Ingo K, Hakimi, Abraham A, Fury, Matthew, Huse, Jason T, Bagrodia, Aditya, Hameed, Meera, Thomas, Stacy, Gardos, Stuart, Cerami, Ethan, Mazor, Tali, Kumari, Priti, Raman, Pichai, Shivdasani, Priyanka, MacFarland, Suzanne, Newman, Scott, Waanders, Angela, Gao, Jianjiong, Solit, David, Schultz, Nikolaus
Published in JCO clinical cancer informatics (24.02.2021)
Published in JCO clinical cancer informatics (24.02.2021)
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Abstract 5440: Deep-learning model for tumor type classification enables enhanced clinical decision support in cancer diagnosis
Darmofal, Madison, Suman, Shalabh, Atwal, Gurnit, Chen, Jie-Fu, Varghese, Anna, Chang, Jason C., Rema, Anoop Balakrishnan, Syed, Aijazuddin, Morris, Quaid, Berger, Michael
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract 3409: MSK-IMPACT Heme: Validation and clinical experience of a comprehensive molecular profiling platform for hematologic malignancies
Ptashkin, Ryan N., Benayed, Ryma, Ziegler, John, Rema, Anoop Balakrishnan, Sadowska, Justyna, Kiecka, Iwona, Ho, Caleb, Yao, JinJuan, Moung, Christine, Petrova-Drus, Kseniya, Nafa, Khedoudja, Batlevi, Connie, Tallman, Martin, Levine, Ross, Giralt, Sergio, Younes, Anas, Ladanyi, Marc, Berger, Mike, Zehir, Ahmet, Arcila, Maria E.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data
Darmofal, Madison, Suman, Shalabh, Atwal, Gurnit, Toomey, Michael, Chen, Jie-Fu, Chang, Jason C, Vakiani, Efsevia, Varghese, Anna M, Balakrishnan Rema, Anoop, Syed, Aijazuddin, Schultz, Nikolaus, Berger, Michael F, Morris, Quaid
Published in Cancer discovery (03.06.2024)
Published in Cancer discovery (03.06.2024)
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Journal Article
Broker-based bus protocol and multi-client architecture
Crosbie, John, Veselov, Pawel, Balakrishnan, Anoop, Acharya, Shrikant
Year of Publication 27.02.2024
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Year of Publication 27.02.2024
Patent
Deep Learning Model for Tumor Type Prediction using Targeted Clinical Genomic Sequencing Data
Darmofal, Madison, Suman, Shalabh, Atwal, Gurnit, Chen, Jie-Fu, Chang, Jason C, Toomey, Michael, Vakiani, Efsevia, Varghese, Anna M, Rema, Anoop Balakrishnan, Syed, Aijazuddin, Schultz, Nikolaus, Berger, Michael, Morris, Quaid
Published in medRxiv : the preprint server for health sciences (10.09.2023)
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Published in medRxiv : the preprint server for health sciences (10.09.2023)
Journal Article
BROKER-BASED BUS PROTOCOL AND MULTI-CLIENT ARCHITECTURE
Crosbie, John, Veselov, Pawel, Balakrishnan, Anoop, Acharya, Shrikant
Year of Publication 09.03.2023
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Year of Publication 09.03.2023
Patent
Broker-based bus protocol and multi-client architecture
Crosbie, John, Veselov, Pawel, Balakrishnan, Anoop, Acharya, Shrikant
Year of Publication 08.11.2022
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Year of Publication 08.11.2022
Patent