mtDNA "nomenclutter" and its consequences on the interpretation of genetic data
Bajić, Vladimir, Schulmann, Vanessa Hava, Nowick, Katja
Published in BMC ecology and evolution (19.08.2024)
Published in BMC ecology and evolution (19.08.2024)
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Journal Article
DEEP: a general computational framework for predicting enhancers
Kleftogiannis, Dimitrios, Kalnis, Panos, Bajic, Vladimir B
Published in Nucleic acids research (01.01.2015)
Published in Nucleic acids research (01.01.2015)
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Journal Article
LncBook: a curated knowledgebase of human long non-coding RNAs
Ma, Lina, Cao, Jiabao, Liu, Lin, Du, Qiang, Li, Zhao, Zou, Dong, Bajic, Vladimir B, Zhang, Zhang
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
DWFS: a wrapper feature selection tool based on a parallel genetic algorithm
Soufan, Othman, Kleftogiannis, Dimitrios, Kalnis, Panos, Bajic, Vladimir B
Published in PloS one (26.02.2015)
Published in PloS one (26.02.2015)
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Journal Article
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
Kulakovskiy, Ivan V, Vorontsov, Ilya E, Yevshin, Ivan S, Sharipov, Ruslan N, Fedorova, Alla D, Rumynskiy, Eugene I, Medvedeva, Yulia A, Magana-Mora, Arturo, Bajic, Vladimir B, Papatsenko, Dmitry A, Kolpakov, Fedor A, Makeev, Vsevolod J
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Progress and challenges in bioinformatics approaches for enhancer identification
Kleftogiannis, Dimitrios, Kalnis, Panos, Bajic, Vladimir B
Published in Briefings in bioinformatics (01.11.2016)
Published in Briefings in bioinformatics (01.11.2016)
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Journal Article
DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions
Kalkatawi, Manal, Magana-Mora, Arturo, Jankovic, Boris, Bajic, Vladimir B
Published in Bioinformatics (01.04.2019)
Published in Bioinformatics (01.04.2019)
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Journal Article
Glutathione “Redox Homeostasis” and Its Relation to Cardiovascular Disease
Isenovic, Esma R., Bajic, Vladimir, Radak, Djordje, Zafirovic, Sonja, Obradovic, Milan, Van Neste, Christophe, Bajic, Vladan P., Essack, Magbubah
Published in Oxidative medicine and cellular longevity (01.01.2019)
Published in Oxidative medicine and cellular longevity (01.01.2019)
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Journal Article
Effects of cytosine methylation on transcription factor binding sites
Medvedeva, Yulia A, Khamis, Abdullah M, Kulakovskiy, Ivan V, Ba-Alawi, Wail, Bhuyan, Md Shariful I, Kawaji, Hideya, Lassmann, Timo, Harbers, Matthias, Forrest, Alistair R R, Bajic, Vladimir B
Published in BMC genomics (26.03.2014)
Published in BMC genomics (26.03.2014)
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Journal Article
Marine biofilms constitute a bank of hidden microbial diversity and functional potential
Zhang, Weipeng, Ding, Wei, Li, Yong-Xin, Tam, Chunkit, Bougouffa, Salim, Wang, Ruojun, Pei, Bite, Chiang, Hoyin, Leung, Pokman, Lu, Yanhong, Sun, Jin, Fu, He, Bajic, Vladimir B, Liu, Hongbin, Webster, Nicole S., Qian, Pei-Yuan
Published in Nature communications (31.01.2019)
Published in Nature communications (31.01.2019)
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Journal Article
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs
Ma, Lina, Li, Ang, Zou, Dong, Xu, Xingjian, Xia, Lin, Yu, Jun, Bajic, Vladimir B, Zhang, Zhang
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
Comparison Study of Computational Prediction Tools for Drug-Target Binding Affinities
Thafar, Maha, Raies, Arwa Bin, Albaradei, Somayah, Essack, Magbubah, Bajic, Vladimir B
Published in Frontiers in chemistry (20.11.2019)
Published in Frontiers in chemistry (20.11.2019)
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Journal Article
LncBook: a curated knowledgebase of human long non-coding RNAs
Ma, Lina, Cao, Jiabao, Liu, Lin, Du, Qiang, Li, Zhao, Zou, Dong, Bajic, Vladimir B, Zhang, Zhang
Published in Nucleic acids research (18.03.2019)
Published in Nucleic acids research (18.03.2019)
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Journal Article
Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach
Chen, Zhang-Fan, Matsumura, Kiyotaka, Wang, Hao, Arellano, Shawn M, Yan, Xingcheng, Alam, Intikhab, Archer, John A C, Bajic, Vladimir B, Qian, Pei-Yuan
Published in PloS one (29.07.2011)
Published in PloS one (29.07.2011)
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Journal Article
Characterization and identification of long non-coding RNAs based on feature relationship
Wang, Guangyu, Yin, Hongyan, Li, Boyang, Yu, Chunlei, Wang, Fan, Xu, Xingjian, Cao, Jiabao, Bao, Yiming, Wang, Liguo, Abbasi, Amir A, Bajic, Vladimir B, Ma, Lina, Zhang, Zhang
Published in Bioinformatics (Oxford, England) (01.09.2019)
Published in Bioinformatics (Oxford, England) (01.09.2019)
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