Interpreting pathways to discover cancer driver genes with Moonlight
Colaprico, Antonio, Olsen, Catharina, Bailey, Matthew H, Odom, Gabriel J, Terkelsen, Thilde, Silva, Tiago C, Olsen, André V, Cantini, Laura, Zinovyev, Andrei, Barillot, Emmanuel, Noushmehr, Houtan, Bertoli, Gloria, Castiglioni, Isabella, Cava, Claudia, Bontempi, Gianluca, Chen, Xi Steven, Papaleo, Elena
Published in Nature communications (03.01.2020)
Published in Nature communications (03.01.2020)
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Journal Article
Protein-structure-guided discovery of functional mutations across 19 cancer types
Niu, Beifang, Scott, Adam D, Sengupta, Sohini, Bailey, Matthew H, Batra, Prag, Ning, Jie, Wyczalkowski, Matthew A, Liang, Wen-Wei, Zhang, Qunyuan, McLellan, Michael D, Sun, Sam Q, Tripathi, Piyush, Lou, Carolyn, Ye, Kai, Mashl, R Jay, Wallis, John, Wendl, Michael C, Chen, Feng, Ding, Li
Published in Nature genetics (01.08.2016)
Published in Nature genetics (01.08.2016)
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Journal Article
Discovery of driver non-coding splice-site-creating mutations in cancer
Cao, Song, Zhou, Daniel Cui, Oh, Clara, Jayasinghe, Reyka G, Zhao, Yanyan, Yoon, Christopher J, Wyczalkowski, Matthew A, Bailey, Matthew H, Tsou, Terrence, Gao, Qingsong, Malone, Andrew, Reynolds, Sheila, Shmulevich, Ilya, Wendl, Michael C, Chen, Feng, Ding, Li
Published in Nature communications (04.11.2020)
Published in Nature communications (04.11.2020)
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Journal Article
Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation
Kauwe, John S K, Bailey, Matthew H, Ridge, Perry G, Perry, Rachel, Wadsworth, Mark E, Hoyt, Kaitlyn L, Staley, Lyndsay A, Karch, Celeste M, Harari, Oscar, Cruchaga, Carlos, Ainscough, Benjamin J, Bales, Kelly, Pickering, Eve H, Bertelsen, Sarah, Fagan, Anne M, Holtzman, David M, Morris, John C, Goate, Alison M
Published in PLoS genetics (01.10.2014)
Published in PLoS genetics (01.10.2014)
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Journal Article
Immunologically "cold" triple negative breast cancers engraft at a higher rate in patient derived xenografts
Petrosyan, Varduhi, Dobrolecki, Lacey E, LaPlante, Emily L, Srinivasan, Ramakrishnan Rajaram, Bailey, Matthew H, Welm, Alana L, Welm, Bryan E, Lewis, Michael T, Milosavljevic, Aleksandar
Published in NPJ breast cancer (10.09.2022)
Published in NPJ breast cancer (10.09.2022)
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Journal Article
Mitochondrial haplotypes associated with biomarkers for Alzheimer's disease
Ridge, Perry G, Koop, Andre, Maxwell, Taylor J, Bailey, Matthew H, Swerdlow, Russell H, Kauwe, John S K, Honea, Robyn A
Published in PloS one (11.09.2013)
Published in PloS one (11.09.2013)
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Journal Article
Integrative omics analyses broaden treatment targets in human cancer
Sengupta, Sohini, Sun, Sam Q, Huang, Kuan-Lin, Oh, Clara, Bailey, Matthew H, Varghese, Rajees, Wyczalkowski, Matthew A, Ning, Jie, Tripathi, Piyush, McMichael, Joshua F, Johnson, Kimberly J, Kandoth, Cyriac, Welch, John, Ma, Cynthia, Wendl, Michael C, Payne, Samuel H, Fenyö, David, Townsend, Reid R, Dipersio, John F, Chen, Feng, Ding, Li
Published in Genome medicine (27.07.2018)
Published in Genome medicine (27.07.2018)
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Journal Article
Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC) Unveils New Actionable Genomic Aberrations in PACC
Florou, Vaia, Elliott, Andrew, Bailey, Matthew H, Stone, David, Affolter, Kajsa, Soares, Heloisa P, Nevala-Plagemann, Chris, Scaife, Courtney, Walker, Phillip, Korn, W Michael, Lou, Emil, Shroff, Rachna T, Hosein, Peter J, Garrido-Laguna, Ignacio
Published in Clinical cancer research (01.09.2023)
Published in Clinical cancer research (01.09.2023)
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Journal Article
Moving pan-cancer studies from basic research toward the clinic
Chen, Feng, Wendl, Michael C, Wyczalkowski, Matthew A, Bailey, Matthew H, Li, Yize, Ding, Li
Published in Nature cancer (01.09.2021)
Published in Nature cancer (01.09.2021)
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Journal Article
A Pan-Cancer Patient-Derived Xenograft Histology Image Repository with Genomic and Pathologic Annotations Enables Deep Learning Analysis
White, Brian S., Woo, Xing Yi, Koc, Soner, Sheridan, Todd, Neuhauser, Steven B., Wang, Shidan, Evrard, Yvonne A., Chen, Li, Foroughi pour, Ali, Landua, John D., Mashl, R. Jay, Davies, Sherri R., Fang, Bingliang, Raso, Maria Gabriela, Evans, Kurt W., Bailey, Matthew H., Chen, Yeqing, Xiao, Min, Rubinstein, Jill C., Sanderson, Brian J., Lloyd, Michael W., Domanskyi, Sergii, Dobrolecki, Lacey E., Fujita, Maihi, Fujimoto, Junya, Xiao, Guanghua, Fields, Ryan C., Mudd, Jacqueline L., Xu, Xiaowei, Hollingshead, Melinda G., Jiwani, Shahanawaz, Acevedo, Saul, Davis-Dusenbery, Brandi N., Robinson, Peter N., Moscow, Jeffrey A., Doroshow, James H., Mitsiades, Nicholas, Kaochar, Salma, Pan, Chong-xian, Carvajal-Carmona, Luis G., Welm, Alana L., Welm, Bryan E., Govindan, Ramaswamy, Li, Shunqiang, Davies, Michael A., Roth, Jack A., Meric-Bernstam, Funda, Xie, Yang, Herlyn, Meenhard, Ding, Li, Lewis, Michael T., Bult, Carol J., Dean, Dennis A., Chuang, Jeffrey H.
Published in Cancer research (Chicago, Ill.) (02.07.2024)
Published in Cancer research (Chicago, Ill.) (02.07.2024)
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Journal Article
Self assembly of model polymers into biological random networks
Bailey, Matthew H.J., Wilson, Mark
Published in Computational and structural biotechnology journal (01.01.2021)
Published in Computational and structural biotechnology journal (01.01.2021)
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Journal Article
Author Correction: Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts
Woo, Xing Yi, Giordano, Jessica, Srivastava, Anuj, Zhao, Zi-Ming, Lloyd, Michael W, de Bruijn, Roebi, Suh, Yun-Suhk, Patidar, Rajesh, Chen, Li, Scherer, Sandra, Bailey, Matthew H, Yang, Chieh-Hsiang, Cortes-Sanchez, Emilio, Xi, Yuanxin, Wang, Jing, Wickramasinghe, Jayamanna, Kossenkov, Andrew V, Rebecca, Vito W, Sun, Hua, Mashl, R Jay, Davies, Sherri R, Jeon, Ryan, Frech, Christian, Randjelovic, Jelena, Rosains, Jacqueline, Galimi, Francesco, Bertotti, Andrea, Lafferty, Adam, O'Farrell, Alice C, Modave, Elodie, Lambrechts, Diether, Ter Brugge, Petra, Serra, Violeta, Marangoni, Elisabetta, El Botty, Rania, Kim, Hyunsoo, Kim, Jong-Il, Yang, Han-Kwang, Lee, Charles, Dean, 2nd, Dennis A, Davis-Dusenbery, Brandi, Evrard, Yvonne A, Doroshow, James H, Welm, Alana L, Welm, Bryan E, Lewis, Michael T, Fang, Bingliang, Roth, Jack A, Meric-Bernstam, Funda, Herlyn, Meenhard, Davies, Michael A, Ding, Li, Li, Shunqiang, Govindan, Ramaswamy, Isella, Claudio, Moscow, Jeffrey A, Trusolino, Livio, Byrne, Annette T, Jonkers, Jos, Bult, Carol J, Medico, Enzo, Chuang, Jeffrey H
Published in Nature genetics (01.05.2021)
Published in Nature genetics (01.05.2021)
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Journal Article
Pan-cancer analysis of somatic mutations across 21 neuroendocrine tumor types
Cao, Yanan, Zhou, Weiwei, Li, Lin, Wang, Jiaqian, Gao, Zhibo, Jiang, Yiran, Jiang, Xiuli, Shan, Aijing, Bailey, Matthew H, Huang, Kuan-Lin, Sun, Sam Q, McLellan, Michael D, Niu, Beifang, Wang, Weiqing, Ding, Li, Ning, Guang
Published in Cell research (01.05.2018)
Published in Cell research (01.05.2018)
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Journal Article
Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging
Ridge, Perry G, Maxwell, Taylor J, Foutz, Spencer J, Bailey, Matthew H, Corcoran, Christopher D, Tschanz, JoAnn T, Norton, Maria C, Munger, Ronald G, O'Brien, Elizabeth, Kerber, Richard A, Cawthon, Richard M, Kauwe, John S K
Published in BMC bioinformatics (2014)
Published in BMC bioinformatics (2014)
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Journal Article
Population substructure in Cache County, Utah: the Cache County study
Sharp, Aaron R, Ridge, Perry G, Bailey, Matthew H, Boehme, Kevin L, Norton, Maria C, Tschanz, JoAnn T, Munger, Ronald G, Corcoran, Christopher D, Kauwe, John S K
Published in BMC bioinformatics (2014)
Published in BMC bioinformatics (2014)
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Journal Article
Abstract B11: The MuSiC2 system for discovery and visualization of coding and noncoding cancer drivers
Wyczalkowski, Matthew A., Bailey, Matthew H., Lou, Carolyn, Hu, Felix, Chen, Justin Y., Batra, Prag, McLellan, Michael D., Ding, Li, Wendl, Michael C.
Published in Cancer research (Chicago, Ill.) (01.10.2018)
Published in Cancer research (Chicago, Ill.) (01.10.2018)
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Journal Article
Abstract 419: Reproducibility assessment of mutations calls in exome- and whole-genome sequencing using consensus calling from TCGA and ICGC
Bailey, Matthew H., Wang, Liang-Bo, Liang, Wen-Wei, Foltz, Steven, Dong, Guanlan, Wendl, Michael C., McLellan, Michael, Hirbe, Angela C., Simpson, Jared, Gerstein, Mark, Ding, Li
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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