Development and optimization of an unbiased, metagenomics-based pathogen detection workflow for infectious disease and biosurveillance applications
Parker, Kyle, Wood, Hillary, Russell, Joseph A, Yarmosh, David, Shteyman, Alan, Bagnoli, John, Knight, Brittany, Aspinwall, Jacob R, Jacobs, Jonathan, Werking, Kristine, Winegar, Richard
Published in Tropical medicine and infectious disease (01.02.2023)
Published in Tropical medicine and infectious disease (01.02.2023)
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Journal Article
Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies
Yarmosh, David A, Lopera, Juan G, Puthuveetil, Nikhita P, Combs, Patrick Ford, Reese, Amy L, Tabron, Corina, Pierola, Amanda E, Duncan, James, Greenfield, Samuel R, Marlow, Robert, King, Stephen, Riojas, Marco A, Bagnoli, John, Benton, Briana, Jacobs, Jonathan L
Published in mSphere (29.06.2022)
Published in mSphere (29.06.2022)
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Journal Article
The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance
Benton, Briana, King, Stephen, Greenfield, Samuel R, Puthuveetil, Nikhita, Reese, Amy L, Duncan, James, Marlow, Robert, Tabron, Corina, Pierola, Amanda E, Yarmosh, David A, Combs, Patrick Ford, Riojas, Marco A, Bagnoli, John, Jacobs, Jonathan L
Published in Microbiology resource announcements (24.11.2021)
Published in Microbiology resource announcements (24.11.2021)
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Journal Article
The ATCC genome portal: 3,938 authenticated microbial reference genomes
Nguyen, Scott V, Puthuveetil, Nikhita P, Petrone, Joseph R, Kirkland, Jade L, Gaffney, Kaitlyn, Tabron, Corina L, Wax, Noah, Duncan, James, King, Stephen, Marlow, Robert, Reese, Amy L, Yarmosh, David A, McConnell, Hannah H, Fernandes, Ana S, Bagnoli, John, Benton, Briana, Jacobs, Jonathan L
Published in Microbiology resource announcements (15.02.2024)
Published in Microbiology resource announcements (15.02.2024)
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Journal Article
Vorpal: A Novel RNA Virus Feature-Extraction Algorithm Demonstrated Through Interpretable Genotype-to-Phenotype Linear Models
Davis, Phillip, Bagnoli, John, Yarmosh, David, Shteyman, Alan, Presser, Lance, Altmann, Sharon, Shelton Bradrick, Russell, Joseph A
Published in bioRxiv (02.03.2020)
Published in bioRxiv (02.03.2020)
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Paper
Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies
Yarmosh, David A, Lopera, Juan G, Puthuveetil, Nikhita P, Patrick Ford Combs, Reese, Amy L, Tabron, Corina, Pierola, Amanda E, Duncan, James, Greenfield, Samuel R, Marlow, Robert, King, Stephen, Riojas, Marco A, Bagnoli, John, Benton, Briana, Jacobs, Jonathan L
Published in bioRxiv (16.12.2021)
Published in bioRxiv (16.12.2021)
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Paper
PanGIA: A Metagenomics Analytical Framework for Routine Biosurveillance and Clinical Pathogen Detection
Po-E Li, Russell, Joseph A, Yarmosh, David, Shteyman, Alan G, Parker, Kyle, Wood, Hillary, Aspinwall, Jr, Winegar, Richard, Davenport, Karen W, Chien-Chi Lo, Bagnoli, John, Phillip Evert Davis, Jacobs, Jonathan L, Chain, Patrick
Published in bioRxiv (23.04.2020)
Published in bioRxiv (23.04.2020)
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