Concept annotation in the CRAFT corpus
Bada, Michael, Eckert, Miriam, Evans, Donald, Garcia, Kristin, Shipley, Krista, Sitnikov, Dmitry, Baumgartner, Jr, William A, Cohen, K Bretonnel, Verspoor, Karin, Blake, Judith A, Hunter, Lawrence E
Published in BMC bioinformatics (09.07.2012)
Published in BMC bioinformatics (09.07.2012)
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Journal Article
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles
Cohen, K Bretonnel, Lanfranchi, Arrick, Choi, Miji Joo-Young, Bada, Michael, Baumgartner, Jr, William A, Panteleyeva, Natalya, Verspoor, Karin, Palmer, Martha, Hunter, Lawrence E
Published in BMC bioinformatics (17.08.2017)
Published in BMC bioinformatics (17.08.2017)
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Concept recognition as a machine translation problem
Boguslav, Mayla R, Hailu, Negacy D, Bada, Michael, Baumgartner, Jr, William A, Hunter, Lawrence E
Published in BMC bioinformatics (17.12.2021)
Published in BMC bioinformatics (17.12.2021)
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A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
Verspoor, Karin, Cohen, Kevin Bretonnel, Lanfranchi, Arrick, Warner, Colin, Johnson, Helen L, Roeder, Christophe, Choi, Jinho D, Funk, Christopher, Malenkiy, Yuriy, Eckert, Miriam, Xue, Nianwen, Baumgartner, Jr, William A, Bada, Michael, Palmer, Martha, Hunter, Lawrence E
Published in BMC bioinformatics (17.08.2012)
Published in BMC bioinformatics (17.08.2012)
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An open source knowledge graph ecosystem for the life sciences
Callahan, Tiffany J, Tripodi, Ignacio J, Stefanski, Adrianne L, Cappelletti, Luca, Taneja, Sanya B, Wyrwa, Jordan M, Casiraghi, Elena, Matentzoglu, Nicolas A, Reese, Justin, Silverstein, Jonathan C, Hoyt, Charles Tapley, Boyce, Richard D, Malec, Scott A, Unni, Deepak R, Joachimiak, Marcin P, Robinson, Peter N, Mungall, Christopher J, Cavalleri, Emanuele, Fontana, Tommaso, Valentini, Giorgio, Mesiti, Marco, Gillenwater, Lucas A, Santangelo, Brook, Vasilevsky, Nicole A, Hoehndorf, Robert, Bennett, Tellen D, Ryan, Patrick B, Hripcsak, George, Kahn, Michael G, Bada, Michael, Baumgartner, Jr, William A, Hunter, Lawrence E
Published in Scientific data (11.04.2024)
Published in Scientific data (11.04.2024)
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KaBOB: ontology-based semantic integration of biomedical databases
Livingston, Kevin M, Bada, Michael, Baumgartner, Jr, William A, Hunter, Lawrence E
Published in BMC bioinformatics (23.04.2015)
Published in BMC bioinformatics (23.04.2015)
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Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
Funk, Christopher, Baumgartner, Jr, William, Garcia, Benjamin, Roeder, Christophe, Bada, Michael, Cohen, K Bretonnel, Hunter, Lawrence E, Verspoor, Karin
Published in BMC bioinformatics (26.02.2014)
Published in BMC bioinformatics (26.02.2014)
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Creating an ignorance-base: Exploring known unknowns in the scientific literature
Boguslav, Mayla R., Salem, Nourah M., White, Elizabeth K., Sullivan, Katherine J., Bada, Michael, Hernandez, Teri L., Leach, Sonia M., Hunter, Lawrence E.
Published in Journal of biomedical informatics (01.07.2023)
Published in Journal of biomedical informatics (01.07.2023)
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Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
Moxon, Sierra A. T., Bruskiewich, Richard, Dancik, Vlado, Dumontier, Michel, Fecho, Karamarie, Putman, Tim, Qin, Guangrong, Ramsey, Stephen A., Soman, Karthik, Thessen, Anne E., Haendel, Melissa A., Mungall, Christopher J., Ahalt, Stanley C., Alden, John, Alkanaq, Ahmed, Avila, Ricardo, Baumgartner, Andrew, Belhu, Basazin, Brandon, Namdi, Burtt, Noel, Byrd, William, Callaghan, Jackson, Cano, Marco Alvarado, Celebi, Remzi, Champion, James, Chen, Zhehuan, Chung, Lawrence, Cohen, Kevin, Costanzo, Maria, Dai, Cheng, Dančík, Vlado, Dougherty, Jennifer, Gardner, Vicki, Glen, Amy, Goel, Prateek, Gormley, Joseph, Greyber, Alon, Haaland, Perry, Hanspers, Kristina, He, Kaiwen, Hinderer, Eugene W., Hubal, Robert, Issabekova, Tursynay, Jarrell, Matthew, Jenkins, Lindsay, Kang, Jimin, Kim, Keum Joo, Knowles, Michael, Koesterer, Ryan, Korn, Daniel, Koslicki, David, Krishnamurthy, Ashok, Kvarfordt, Lindsey, Leigh, Margaret, Magis, Andrew, Mamidi, Tarun, Mantilla, Michelle, Massung, Jeffrey, Mauldin, Denise, McMurry, Julie, Mease, Philip, Mendoza, Luis, Mersmann, Marian, Muller, Sandrine, Muluka, Arun Teja, Osborne, John, Owen, Phil, Patton, Michael, Peden, David B., Peene, R. Carter, Pfaff, Emily, Price, Guthrie, Raj, Shruti, Reilly, Jason, Roach, Jared, Roper, Ryan T., Rosenblatt, Greg, Rubin, Irit, Scott, Erik, Sharma, Priya, Shrestha, Manil, Sinha, Meghamala, Southall, Noel, Stillwell, Lisa, Strasser, Michael " Michi", Tinglin, Jillian, Tropsha, Alexander, Vaidya, Gaurav, Viola, Adam, Wang, Max, Weber, Rosina, Wei, Qi, Whitlock, Jordan, Williams, Mark D., Xin, Jiwen Kevin, Xu, Hao, Xu, Colleen, Yao, Yao, Zhou, Eric, Zisk, Tom
Published in Clinical and translational science (01.08.2022)
Published in Clinical and translational science (01.08.2022)
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Cross-product extensions of the Gene Ontology
Mungall, Christopher J., Bada, Michael, Berardini, Tanya Z., Deegan, Jennifer, Ireland, Amelia, Harris, Midori A., Hill, David P., Lomax, Jane
Published in Journal of biomedical informatics (01.02.2011)
Published in Journal of biomedical informatics (01.02.2011)
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OWL-NETS: Transforming OWL Representations for Improved Network Inference
Callahan, Tiffany J, Baumgartner, William A, Bada, Michael, Stefanski, Adrianne L, Tripodi, Ignacio, White, Elizabeth K, Hunter, Lawrence E
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2018)
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2018)
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Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement
Yadav, Prabha, Jezek, Elisabetta, Bouillon, Pierrette, Callahan, Tiffany J, Bada, Michael, Hunter, Lawrence E, Cohen, K Bretonnel
Published in Studies in health technology and informatics (2017)
Published in Studies in health technology and informatics (2017)
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Journal Article
Representing annotation compositionality and provenance for the Semantic Web
Livingston, Kevin M, Bada, Michael, Hunter, Lawrence E, Verspoor, Karin
Published in Journal of biomedical semantics (22.11.2013)
Published in Journal of biomedical semantics (22.11.2013)
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