Using sequence similarity networks for visualization of relationships across diverse protein superfamilies
Atkinson, Holly J, Morris, John H, Ferrin, Thomas E, Babbitt, Patricia C
Published in PloS one (03.02.2009)
Published in PloS one (03.02.2009)
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Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain
Holliday, Gemma L, Akiva, Eyal, Meng, Elaine C, Brown, Shoshana D, Calhoun, Sara, Pieper, Ursula, Sali, Andrej, Booker, Squire J, Babbitt, Patricia C
Published in Methods in enzymology (2018)
Published in Methods in enzymology (2018)
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Large-scale determination of sequence, structure, and function relationships in cytosolic glutathione transferases across the biosphere
Mashiyama, Susan T, Malabanan, M Merced, Akiva, Eyal, Bhosle, Rahul, Branch, Megan C, Hillerich, Brandan, Jagessar, Kevin, Kim, Jungwook, Patskovsky, Yury, Seidel, Ronald D, Stead, Mark, Toro, Rafael, Vetting, Matthew W, Almo, Steven C, Armstrong, Richard N, Babbitt, Patricia C
Published in PLoS biology (01.04.2014)
Published in PLoS biology (01.04.2014)
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Convergent adaptation of human lactase persistence in Africa and Europe
Tishkoff, Sarah A, Reed, Floyd A, Ranciaro, Alessia, Voight, Benjamin F, Babbitt, Courtney C, Silverman, Jesse S, Powell, Kweli, Mortensen, Holly M, Hirbo, Jibril B, Osman, Maha, Ibrahim, Muntaser, Omar, Sabah A, Lema, Godfrey, Nyambo, Thomas B, Ghori, Jilur, Bumpstead, Suzannah, Pritchard, Jonathan K, Wray, Gregory A, Deloukas, Panos
Published in Nature genetics (01.01.2007)
Published in Nature genetics (01.01.2007)
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Biases in the experimental annotations of protein function and their effect on our understanding of protein function space
Schnoes, Alexandra M, Ream, David C, Thorman, Alexander W, Babbitt, Patricia C, Friedberg, Iddo
Published in PLoS computational biology (01.05.2013)
Published in PLoS computational biology (01.05.2013)
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Journal Article
Integrin α6 and EGFR signaling converge at mechanosensitive calpain 2
Schwartz, A.D., Hall, C.L., Barney, L.E., Babbitt, C.C., Peyton, S.R.
Published in Biomaterials (01.09.2018)
Published in Biomaterials (01.09.2018)
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Journal Article
Discovery of new enzymes and metabolic pathways by using structure and genome context
Zhao, Suwen, Kumar, Ritesh, Sakai, Ayano, Vetting, Matthew W., Wood, B. McKay, Brown, Shoshana, Bonanno, Jeffery B., Hillerich, Brandan S., Seidel, Ronald D., Babbitt, Patricia C., Almo, Steven C., Sweedler, Jonathan V., Gerlt, John A., Cronan, John E., Jacobson, Matthew P.
Published in Nature (London) (31.10.2013)
Published in Nature (London) (31.10.2013)
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Toward mechanistic classification of enzyme functions
Almonacid, Daniel E, Babbitt, Patricia C
Published in Current opinion in chemical biology (01.06.2011)
Published in Current opinion in chemical biology (01.06.2011)
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Journal Article
Gene expression and adaptive noncoding changes during human evolution
Babbitt, Courtney C, Haygood, Ralph, Nielsen, William J, Wray, Gregory A
Published in BMC genomics (05.06.2017)
Published in BMC genomics (05.06.2017)
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Journal Article
Tempo and mode of gene expression evolution in the brain across primates
Rickelton, Katherine, Zintel, Trisha M, Pizzollo, Jason, Miller, Emily, Ely, John J, Raghanti, Mary Ann, Hopkins, William D, Hof, Patrick R, Sherwood, Chet C, Bauernfeind, Amy L, Babbitt, Courtney C
Published in eLife (26.01.2024)
Published in eLife (26.01.2024)
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Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily
Wallrapp, Frank H, Pan, Jian-Jung, Ramamoorthy, Gurusankar, Almonacid, Daniel E, Hillerich, Brandan S, Seidel, Ronald, Patskovsky, Yury, Babbitt, Patricia C, Almo, Steven C, Jacobson, Matthew P, Poulter, C Dale
Published in Proceedings of the National Academy of Sciences - PNAS (26.03.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.03.2013)
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