Mechanistic and Bioinformatic Investigation of a Conserved Active Site Helix in α‑Isopropylmalate Synthase from Mycobacterium tuberculosis, a Member of the DRE-TIM Metallolyase Superfamily
Casey, Ashley K, Hicks, Michael A, Johnson, Jordyn L, Babbitt, Patricia C, Frantom, Patrick A
Published in Biochemistry (Easton) (13.05.2014)
Published in Biochemistry (Easton) (13.05.2014)
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Exploring the sequence, function, and evolutionary space of protein superfamilies using sequence similarity networks and phylogenetic reconstructions
Copp, Janine N, Anderson, Dave W, Akiva, Eyal, Babbitt, Patricia C, Tokuriki, Nobuhiko
Published in Methods in enzymology (2019)
Published in Methods in enzymology (2019)
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Evolutionary Divergence of Gene and Protein Expression in the Brains of Humans and Chimpanzees
Bauernfeind, Amy L, Soderblom, Erik J, Turner, Meredith E, Moseley, M Arthur, Ely, John J, Hof, Patrick R, Sherwood, Chet C, Wray, Gregory A, Babbitt, Courtney C
Published in Genome biology and evolution (01.08.2015)
Published in Genome biology and evolution (01.08.2015)
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Mandelate pathway of Pseudomonas putida: sequence relationships involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli
Tsou, Amy Y, Ransom, Stephen C, Gerlt, John A, Buechter, Douglas D, Babbitt, Patricia C, Kenyon, George L
Published in Biochemistry (Easton) (01.10.1990)
Published in Biochemistry (Easton) (01.10.1990)
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structureViz: linking Cytoscape and UCSF Chimera
Morris, John H., Huang, Conrad C., Babbitt, Patricia C., Ferrin, Thomas E.
Published in Bioinformatics (01.09.2007)
Published in Bioinformatics (01.09.2007)
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InterPro in 2019: improving coverage, classification and access to protein sequence annotations
Mitchell, Alex L, Attwood, Teresa K, Babbitt, Patricia C, Blum, Matthias, Bork, Peer, Bridge, Alan, Brown, Shoshana D, Chang, Hsin-Yu, El-Gebali, Sara, Fraser, Matthew I, Gough, Julian, Haft, David R, Huang, Hongzhan, Letunic, Ivica, Lopez, Rodrigo, Luciani, Aurélien, Madeira, Fabio, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Nuka, Gift, Orengo, Christine, Pandurangan, Arun P, Paysan-Lafosse, Typhaine, Pesseat, Sebastien, Potter, Simon C, Qureshi, Matloob A, Rawlings, Neil D, Redaschi, Nicole, Richardson, Lorna J, Rivoire, Catherine, Salazar, Gustavo A, Sangrador-Vegas, Amaia, Sigrist, Christian J A, Sillitoe, Ian, Sutton, Granger G, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Yong, Siew-Yit, Finn, Robert D
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Comparison of methods for genomic localization of gene trap sequences
Harper, Courtney A, Huang, Conrad C, Stryke, Doug, Kawamoto, Michiko, Ferrin, Thomas E, Babbitt, Patricia C
Published in BMC genomics (18.09.2006)
Published in BMC genomics (18.09.2006)
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Prediction of Substrates for Glutathione Transferases by Covalent Docking
Dong, Guang Qiang, Calhoun, Sara, Fan, Hao, Kalyanaraman, Chakrapani, Branch, Megan C, Mashiyama, Susan T, London, Nir, Jacobson, Matthew P, Babbitt, Patricia C, Shoichet, Brian K, Armstrong, Richard N, Sali, Andrej
Published in Journal of chemical information and modeling (23.06.2014)
Published in Journal of chemical information and modeling (23.06.2014)
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Novel Enzymic Hydrolytic Dehalogenation of a Chlorinated Aromatic
Scholten, Jeffrey D., Chang, Kai-Hsuan, Babbitt, Patricia C., Charest, Hugues, Sylvestre, Michel, Dunaway-Mariano, Debra
Published in Science (American Association for the Advancement of Science) (12.07.1991)
Published in Science (American Association for the Advancement of Science) (12.07.1991)
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Key challenges for the creation and maintenance of specialist protein resources
Holliday, Gemma L., Bairoch, Amos, Bagos, Pantelis G., Chatonnet, Arnaud, Craik, David J., Finn, Robert D., Henrissat, Bernard, Landsman, David, Manning, Gerard, Nagano, Nozomi, O'Donovan, Claire, Pruitt, Kim D., Rawlings, Neil D., Saier, Milton, Sowdhamini, Ramanathan, Spedding, Michael, Srinivasan, Narayanaswamy, Vriend, Gert, Babbitt, Patricia C., Bateman, Alex
Published in Proteins, structure, function, and bioinformatics (01.06.2015)
Published in Proteins, structure, function, and bioinformatics (01.06.2015)
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The Structure Superposition Database
Chiang, Ranyee A., Meng, Elaine C., Huang, Conrad C., Ferrin, Thomas E., Babbitt, Patricia C.
Published in Nucleic acids research (01.01.2003)
Published in Nucleic acids research (01.01.2003)
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The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse
Nord, Alex S., Chang, Patricia J., Conklin, Bruce R., Cox, Antony V., Harper, Courtney A., Hicks, Geoffrey G., Huang, Conrad C., Johns, Susan J., Kawamoto, Michiko, Liu, Songyan, Meng, Elaine C., Morris, John H., Rossant, Janet, Ruiz, Patricia, Skarnes, William C., Soriano, Philippe, Stanford, William L., Stryke, Doug, von Melchner, Harald, Wurst, Wolfgang, Yamamura, Ken-ichi, Young, Stephen G., Babbitt, Patricia C., Ferrin, Thomas E.
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Evolutionary Potential of (β/α)8-Barrels: Functional Promiscuity Produced by Single Substitutions in the Enolase Superfamily
Schmidt, Dawn M. Z, Mundorff, Emily C, Dojka, Michael, Bermudez, Ericka, Ness, Jon E, Govindarajan, Sridhar, Babbitt, Patricia C, Minshull, Jeremy, Gerlt, John A
Published in Biochemistry (Easton) (22.07.2003)
Published in Biochemistry (Easton) (22.07.2003)
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