MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs
Huson, Daniel H, Albrecht, Benjamin, Bağcı, Caner, Bessarab, Irina, Górska, Anna, Jolic, Dino, Williams, Rohan B H
Published in Biology direct (20.04.2018)
Published in Biology direct (20.04.2018)
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Journal Article
The Isolate Caproiciproducens sp. 7D4C2 Produces n -Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria
Esquivel-Elizondo, Sofia, Bağcı, Caner, Temovska, Monika, Jeon, Byoung Seung, Bessarab, Irina, Williams, Rohan B H, Huson, Daniel H, Angenent, Largus T
Published in Frontiers in microbiology (14.01.2021)
Published in Frontiers in microbiology (14.01.2021)
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Journal Article
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
Arumugam, Krithika, Bağcı, Caner, Bessarab, Irina, Beier, Sina, Buchfink, Benjamin, Górska, Anna, Qiu, Guanglei, Huson, Daniel H, Williams, Rohan B H
Published in Microbiome (16.04.2019)
Published in Microbiome (16.04.2019)
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Journal Article
Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis
Gautam, Anupam, Felderhoff, Hendrik, Bağci, Caner, Huson, Daniel H
Published in mSystems (22.02.2022)
Published in mSystems (22.02.2022)
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Journal Article
BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes
Bağcı, Caner, Nuhamunada, Matin, Goyat, Hemant, Ladanyi, Casimir, Sehnal, Ludek, Blin, Kai, Kautsar, Satria A, Tagirdzhanov, Azat, Gurevich, Alexey, Mantri, Shrikant, von Mering, Christian, Udwary, Daniel, Medema, Marnix H, Weber, Tilmann, Ziemert, Nadine
Published in Nucleic acids research (29.10.2024)
Published in Nucleic acids research (29.10.2024)
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Journal Article
MAIRA: Protein-based Analysis of MinION Reads on a Laptop
Bağcı, Caner, Albrecht, Benjamin, Huson, Daniel H
Published in Methods in molecular biology (Clifton, N.J.) (2023)
Published in Methods in molecular biology (Clifton, N.J.) (2023)
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Journal Article
Microbial Phylogenetic Context Using Phylogenetic Outlines
Bagci, Caner, Bryant, David, Cetinkaya, Banu, Huson, Daniel H
Published in Genome biology and evolution (01.09.2021)
Published in Genome biology and evolution (01.09.2021)
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Journal Article
Strong pairwise interactions do not drive interactions in a plant leaf associated microbial community
Höhn, Franziska, Chaudhry, Vasvi, Bagci, Caner, Mahmoudi, Maryam, Klenk3, Elke, Berg, Lara, Stincone, Paolo, Hughes, Chambers C, Petras, Daniel, Brötz-Oesterhelt, Heike, Kemen, Eric, Ziemert, Nadine
Published in ISME Communications (04.10.2024)
Published in ISME Communications (04.10.2024)
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Journal Article
Removing contamination from genomic sequences based on vector reference libraries
Bagci, C., Allmer, J.
Published in 2012 7th International Symposium on Health Informatics and Bioinformatics (01.04.2012)
Published in 2012 7th International Symposium on Health Informatics and Bioinformatics (01.04.2012)
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Conference Proceeding