Uncertainty-informed deep learning models enable high-confidence predictions for digital histopathology
Dolezal, James M, Srisuwananukorn, Andrew, Karpeyev, Dmitry, Ramesh, Siddhi, Kochanny, Sara, Cody, Brittany, Mansfield, Aaron S, Rakshit, Sagar, Bansal, Radhika, Bois, Melanie C, Bungum, Aaron O, Schulte, Jefree J, Vokes, Everett E, Garassino, Marina Chiara, Husain, Aliya N, Pearson, Alexander T
Published in Nature communications (02.11.2022)
Published in Nature communications (02.11.2022)
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Journal Article
Neoantigenic Potential of Complex Chromosomal Rearrangements in Mesothelioma
Mansfield, Aaron S., Peikert, Tobias, Smadbeck, James B., Udell, Julia B.M., Garcia-Rivera, Enrique, Elsbernd, Laura, Erskine, Courtney L., Van Keulen, Virginia P., Kosari, Farhad, Murphy, Stephen J., Ren, Hongzheng, Serla, Vishnu V., Schaefer Klein, Janet L., Karagouga, Giannoula, Harris, Faye R., Sosa, Carlos, Johnson, Sarah H., Nevala, Wendy, Markovic, Svetomir N., Bungum, Aaron O., Edell, Eric S., Dong, Haidong, Cheville, John C., Aubry, Marie Christine, Jen, Jin, Vasmatzis, George
Published in Journal of thoracic oncology (01.02.2019)
Published in Journal of thoracic oncology (01.02.2019)
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Journal Article
ANK1 Methylation regulates expression of MicroRNA-486-5p and discriminates lung tumors by histology and smoking status
Tessema, Mathewos, Yingling, Christin M., Picchi, Maria A., Wu, Guodong, Ryba, Tyrone, Lin, Yong, Bungum, Aaron O., Edell, Eric S., Spira, Avrum, Belinsky, Steven A.
Published in Cancer letters (01.12.2017)
Published in Cancer letters (01.12.2017)
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CT screening for lung cancer: five-year prospective experience
Swensen, Stephen J, Jett, James R, Hartman, Thomas E, Midthun, David E, Mandrekar, Sumithra J, Hillman, Shauna L, Sykes, Anne-Marie, Aughenbaugh, Gregory L, Bungum, Aaron O, Allen, Katie L
Published in Radiology (01.04.2005)
Published in Radiology (01.04.2005)
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Optimizing clinical cytology touch preparations for next generation sequencing
Murphy, Stephen J., Harris, Faye R., Smadbeck, James B., Serla, Vishnu, Karagouga, Giannoula, Johnson, Sarah H., Kosari, Farhad, Pierson, Karlyn E., Bungum, Aaron O., Edell, Eric S., Mansfield, Aaron S., Wigle, Dennis A., Kipp, Benjamin R., Vasmatzis, George, Aubry, Marie Christine
Published in Genomics (San Diego, Calif.) (01.11.2020)
Published in Genomics (San Diego, Calif.) (01.11.2020)
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Journal Article
Remotely operated robotic microscopy for rapid diagnosis of bronchoscopic cytology specimens
Naso, Julia R., Chan, Jackie, Reisenauer, Janani, Edell, Eric S., Stackhouse, Katherine, Bungum, Aaron O., Vierkant, Robert A., Pierson, Karlyn, Seidl, Andrew, Sturgis, Charles D., Meroueh, Chady, Huang, Yajue, Hartley, Christopher P.
Published in Diagnostic cytopathology (01.09.2023)
Published in Diagnostic cytopathology (01.09.2023)
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Journal Article
Common Oncogene Mutations and Novel SND1-BRAF Transcript Fusion in Lung Adenocarcinoma from Never Smokers
Jang, Jin Sung, Lee, Adam, Li, Jun, Liyanage, Hema, Yang, Yanan, Guo, Lixia, Asmann, Yan W, Li, Peter W, Erickson-Johnson, Michele, Sakai, Yuta, Sun, ZhiFu, Jeon, Hyo-Sung, Hwang, Hayoung, Bungum, Aaron O, Edell, Eric S, Simon, Vernadette A, Kopp, Karla J, Eckloff, Bruce, Oliveira, Andre M, Wieben, Eric, Aubry, Marie Christine, Yi, Eunhee, Wigle, Dennis, Diasio, Robert B, Yang, Ping, Jen, Jin
Published in Scientific reports (18.05.2015)
Published in Scientific reports (18.05.2015)
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Journal Article
Development and Validation of a Plasma Biomarker Panel for Discerning Clinical Significance of Indeterminate Pulmonary Nodules
Daly, Shaun, Rinewalt, Daniel, Fhied, Cristina, Basu, Sanjib, Mahon, Brett, Liptay, Michael J., Hong, Edward, Chmielewski, Gary, Yoder, Mark A., Shah, Palmi N., Edell, Eric S., Maldonado, Fabien, Bungum, Aaron O., Borgia, Jeffrey A.
Published in Journal of thoracic oncology (01.01.2013)
Published in Journal of thoracic oncology (01.01.2013)
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Journal Article
Network-based approach identified cell cycle genes as predictor of overall survival in lung adenocarcinoma patients
Li, Yafei, Tang, Hui, Sun, Zhifu, Bungum, Aaron O, Edell, Eric S, Lingle, Wilma L, Stoddard, Shawn M, Zhang, Mingrui, Jen, Jin, Yang, Ping, Wang, Liang
Published in Lung cancer (Amsterdam, Netherlands) (01.04.2013)
Published in Lung cancer (Amsterdam, Netherlands) (01.04.2013)
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Journal Article
Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium
Birse, Charles E, Lagier, Robert J, FitzHugh, William, Pass, Harvey I, Rom, William N, Edell, Eric S, Bungum, Aaron O, Maldonado, Fabien, Jett, James R, Mesri, Mehdi, Sult, Erin, Joseloff, Elizabeth, Li, Aiqun, Heidbrink, Jenny, Dhariwal, Gulshan, Danis, Chad, Tomic, Jennifer L, Bruce, Robert J, Moore, Paul A, He, Tao, Lewis, Marcia E, Ruben, Steve M
Published in Clinical proteomics (16.07.2015)
Published in Clinical proteomics (16.07.2015)
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Journal Article
EGFR Somatic Mutations in Lung Tumors: Radon Exposure and Passive Smoking in Former- and Never-Smoking U.S. Women
TAGA, Masataka, MECHANIC, Leah E, EDELL, Eric, BUNGUM, Aaron, JIN SUNG JANG, PING YANG, JEN, Jin, HARRIS, Curtis C, HAGIWARA, Nobutoshi, VÄHÄKANGAS, Kirsi H, BENNETT, William P, ALAVANJA, Michael C. R, WELSH, Judith A, KHAN, Mohammed A, LEE, Adam, DIASIO, Robert
Published in Cancer epidemiology, biomarkers & prevention (01.06.2012)
Published in Cancer epidemiology, biomarkers & prevention (01.06.2012)
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Journal Article
Granulomatous inflammation detected by endobronchial ultrasound-guided transbronchial needle aspiration in patients with a concurrent diagnosis of cancer: a clinical conundrum
DePew, Zachary S, Gonsalves, Wilson I, Roden, Anja C, Bungum, Aaron O, Mullon, John J, Maldonado, Fabien
Published in Journal of bronchology & interventional pulmonology (01.07.2012)
Published in Journal of bronchology & interventional pulmonology (01.07.2012)
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Journal Article
Endobronchial ultrasound-guided transbronchial needle aspiration: determinants of sampling adequacy
DePew, Zachary S, Edell, Eric S, Midthun, David E, Mullon, John J, Bungum, Aaron O, Decker, Paul A, Maldonado, Fabien
Published in Journal of bronchology & interventional pulmonology (01.10.2012)
Published in Journal of bronchology & interventional pulmonology (01.10.2012)
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Journal Article
Application of Global Lung Function Initiative Global Spirometry Reference Equations across a Large, Multicenter Pulmonary Function Lab Population
Kanj, Amjad N, Scanlon, Paul D, Yadav, Hemang, Smith, William T, Herzog, Tyler L, Bungum, Aaron, Poliszuk, Daniel, Fick, Edward, Lee, Augustine S, Niven, Alexander S
Published in American journal of respiratory and critical care medicine (01.01.2024)
Published in American journal of respiratory and critical care medicine (01.01.2024)
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Journal Article
The use of artificial intelligence with uncertainty estimation to predict lung cancer relapse from histopathology
Dolezal, James M, Kochanny, Sara, Zhu, Annie, Rakshit, Sagar, Bansal, Radhika, Bois, Melanie C., Bungum, Aaron O, Garassino, Marina Chiara, Bestvina, Christine M., Mansfield, Aaron Scott, Pearson, Alexander T.
Published in Journal of clinical oncology (01.06.2022)
Published in Journal of clinical oncology (01.06.2022)
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Journal Article
Quantitative 3D assessment of the lung cancer microenvironment using multi-resolution open-top light-sheet microscopy
Stoltzfus, Caleb R, Reder, Nicholas, Alvarsson, Alexandra, DeWitt, Anna, Storey, Carl, Wilson, Jasmine, Grant, Nathan, Simmons, David, Olin-Pope, Brandy, Vierkant, Robert A., Tufariello, Jessica, Bungum, Aaron O, Naso, Julia R., Chan, Cheuk Ki, Edell, Eric S, Hartley, Christopher P, Reisenauer, Janani S
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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Journal Article
Abstract 6624: 3D assessment of the lung cancer microenvironment using multi-resolution open-top light-sheet microscopy
Alvarsson, Alexandra, Storey, Carl, Pope, Brandy Olin, Stoltzfus, Caleb, Vierkant, Robert, Tufariello, Jessica, Bungum, Aaron, Naso, Julia, Chan, Cheuk Ki, Edell, Eric, Hartley, Christopher, Reisenauer, Janani, Reder, Nicholas
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract 5726: Rearrangement-related peptides with neoantigenic potential in malignant pleural mesothelioma
Mansfield, Aaron S., Peikert, Tobias, Smadbeck, James B., Udell, Julia B., Kosari, Farhad, Murphy, Stephen J., Ren, Hongzheng, Serla, Vishnu V., Klein, Janet L. Schaefer, Karagouga, Giannoula, Harris, Faye R., Sosa, Carlos, Johnson, Sarah H., Nevala, Wendy, Markovic, Svetomir N., Bungum, Aaron O., Edell, Eric S., Dong, Haidong, Cheville, John C., Aubry, Marie Christine, Jen, Jin, Vasmatzis, George
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Individualized cell-free DNA monitoring with chromosomal junctions for mesothelioma
Parikh, Kaushal, Harris, Faye R., Karagouga, Giannoula, Schrandt, Amy, Mandrekar, Jay, Johnson, Sarah, McCune, Alexa, Sadeghian, Dorsay, Debarshi, Roy, Polonis, Katarzyna, Gaitatzes, Athanasios, Bungum, Aaron O., Edell, Eric S., Schaefer Klein, Janet, Borad, Mitesh J., Peikert, Tobias, Kosari, Farhad, Cheville, John, Vasmatzis, George, Mansfield, Aaron S.
Published in JTO clinical and research reports (01.05.2024)
Published in JTO clinical and research reports (01.05.2024)
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Journal Article
Added Value of a Serum Proteomic Signature in the Diagnostic Evaluation of Lung Nodules
PECOT, Chad V, MING LI, GROGAN, Eric L, CARBONE, David P, WORRELL, John A, MOONS, Karel G. M, SHYR, Yu, MASSION, Pierre P, ZHANG, Xueqiong J, RAJANBABU, Rama, CALITRI, Ciara, BUNGUM, Aaron, JETT, James R, PUTNAM, Joe B, CALLAWAY-LANE, Carol, DEPPEN, Steve
Published in Cancer epidemiology, biomarkers & prevention (01.05.2012)
Published in Cancer epidemiology, biomarkers & prevention (01.05.2012)
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