ElliPro: a new structure-based tool for the prediction of antibody epitopes
Ponomarenko, Julia, Bui, Huynh-Hoa, Li, Wei, Fusseder, Nicholas, Bourne, Philip E, Sette, Alessandro, Peters, Bjoern
Published in BMC bioinformatics (02.12.2008)
Published in BMC bioinformatics (02.12.2008)
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Journal Article
Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA
Hosono, Yasuyuki, Niknafs, Yashar S., Prensner, John R., Iyer, Matthew K., Dhanasekaran, Saravana M., Mehra, Rohit, Pitchiaya, Sethuramasundaram, Tien, Jean, Escara-Wilke, June, Poliakov, Anton, Chu, Shih-Chun, Saleh, Sahal, Sankar, Keerthana, Su, Fengyun, Guo, Shuling, Qiao, Yuanyuan, Freier, Susan M., Bui, Huynh-Hoa, Cao, Xuhong, Malik, Rohit, Johnson, Timothy M., Beer, David G., Feng, Felix Y., Zhou, Weibin, Chinnaiyan, Arul M.
Published in Cell (14.12.2017)
Published in Cell (14.12.2017)
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Journal Article
Steric Inhibition of 5′ UTR Regulatory Elements Results in Upregulation of Human CFTR
Sasaki, Shruti, Sun, Rachel, Bui, Huynh-Hoa, Crosby, Jeff R., Monia, Brett P., Guo, Shuling
Published in Molecular therapy (02.10.2019)
Published in Molecular therapy (02.10.2019)
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Journal Article
Antisense oligonucleotides targeting translation inhibitory elements in 5' UTRs can selectively increase protein levels
Liang, Xue-Hai, Sun, Hong, Shen, Wen, Wang, Shiyu, Yao, Joyee, Migawa, Michael T, Bui, Huynh-Hoa, Damle, Sagar S, Riney, Stan, Graham, Mark J, Crooke, Rosanne M, Crooke, Stanley T
Published in Nucleic acids research (19.09.2017)
Published in Nucleic acids research (19.09.2017)
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Journal Article
Predicting population coverage of T-cell epitope-based diagnostics and vaccines
Bui, Huynh-Hoa, Sidney, John, Dinh, Kenny, Southwood, Scott, Newman, Mark J, Sette, Alessandro
Published in BMC bioinformatics (17.03.2006)
Published in BMC bioinformatics (17.03.2006)
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Journal Article
Hepatotoxicity of high affinity gapmer antisense oligonucleotides is mediated by RNase H1 dependent promiscuous reduction of very long pre-mRNA transcripts
Burel, Sebastien A, Hart, Christopher E, Cauntay, Patrick, Hsiao, Jill, Machemer, Todd, Katz, Melanie, Watt, Andy, Bui, Huynh-Hoa, Younis, Husam, Sabripour, Mahyar, Freier, Susan M, Hung, Gene, Dan, Amy, Prakash, T P, Seth, Punit P, Swayze, Eric E, Bennett, C Frank, Crooke, Stanley T, Henry, Scott P
Published in Nucleic acids research (18.03.2016)
Published in Nucleic acids research (18.03.2016)
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Journal Article
Integrated Safety Assessment of 2′-O-Methoxyethyl Chimeric Antisense Oligonucleotides in NonHuman Primates and Healthy Human Volunteers
Crooke, Stanley T, Baker, Brenda F, Kwoh, T Jesse, Cheng, Wei, Schulz, Dan J, Xia, Shuting, Salgado, Nelson, Bui, Huynh-Hoa, Hart, Christopher E, Burel, Sebastien A, Younis, Husam S, Geary, Richard S, Henry, Scott P, Bhanot, Sanjay
Published in Molecular therapy (01.10.2016)
Published in Molecular therapy (01.10.2016)
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Journal Article
A consensus epitope prediction approach identifies the breadth of murine TCD8+-cell responses to vaccinia virus
MOUTAFISI, Magdalini, PETERS, Bjoern, PASQUETTO, Valerie, TSCHARKE, David C, SIDNEY, John, BUI, Huynh-Hoa, GREY, Howard, SETTE, Alessandro
Published in Nature biotechnology (01.07.2006)
Published in Nature biotechnology (01.07.2006)
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Journal Article
Immune epitope database analysis resource (IEDB-AR)
Zhang, Qing, Wang, Peng, Kim, Yohan, Haste-Andersen, Pernille, Beaver, John, Bourne, Philip E, Bui, Huynh-Hoa, Buus, Soren, Frankild, Sune, Greenbaum, Jason, Lund, Ole, Lundegaard, Claus, Nielsen, Morten, Ponomarenko, Julia, Sette, Alessandro, Zhu, Zhanyang, Peters, Bjoern
Published in Nucleic acids research (01.07.2008)
Published in Nucleic acids research (01.07.2008)
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Journal Article
Immunomic Analysis of the Repertoire of T-Cell Specificities for Influenza A Virus in Humans
ASSARSSON, Erika, BUI, Huynh-Hoa, SETTE, Alessandro, SIDNEY, John, QING ZHANG, GLENN, Jean, OSEROFF, Carla, MBAWUIKE, Innocent N, ALEXANDER, Jeff, NEWMAN, Mark J, GREY, Howard
Published in Journal of Virology (15.12.2008)
Published in Journal of Virology (15.12.2008)
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Journal Article
Identification and Validation of PCAT14 as Prognostic Biomarker in Prostate Cancer
Shukla, Sudhanshu, Zhang, Xiang, Niknafs, Yashar S, Xiao, Lanbo, Mehra, Rohit, Cieślik, Marcin, Ross, Ashley, Schaeffer, Edward, Malik, Bhavna, Guo, Shuling, Freier, Susan M, Bui, Huynh-Hoa, Siddiqui, Javed, Jing, Xiaojun, Cao, Xuhong, Dhanasekaran, Saravana M, Feng, Felix Y, Chinnaiyan, Arul M, Malik, Rohit
Published in Neoplasia (New York, N.Y.) (01.08.2016)
Published in Neoplasia (New York, N.Y.) (01.08.2016)
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Journal Article
GOLGA8 increases bulk antisense oligonucleotide uptake and activity in mammalian cells
McMahon, Moira A., Rahdar, Meghdad, Mukhopadhyay, Swagatam, Bui, Huynh-Hoa, Hart, Christopher, Damle, Sagar, Courtney, Margo, Baughn, Michael W., Cleveland, Don W., Bennett, C. Frank
Published in Molecular therapy. Nucleic acids (13.06.2023)
Published in Molecular therapy. Nucleic acids (13.06.2023)
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Journal Article
A community resource benchmarking predictions of peptide binding to MHC-I molecules
Peters, Bjoern, Bui, Huynh-Hoa, Frankild, Sune, Nielson, Morten, Lundegaard, Claus, Kostem, Emrah, Basch, Derek, Lamberth, Kasper, Harndahl, Mikkel, Fleri, Ward, Wilson, Stephen S, Sidney, John, Lund, Ole, Buus, Soren, Sette, Alessandro
Published in PLoS computational biology (01.06.2006)
Published in PLoS computational biology (01.06.2006)
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Journal Article
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools
Greenbaum, Jason A., Andersen, Pernille Haste, Blythe, Martin, Bui, Huynh-Hoa, Cachau, Raul E., Crowe, James, Davies, Matthew, Kolaskar, A. S., Lund, Ole, Morrison, Sherrie, Mumey, Brendan, Ofran, Yanay, Pellequer, Jean-Luc, Pinilla, Clemencia, Ponomarenko, Julia V., Raghava, G. P. S., van Regenmortel, Marc H. V., Roggen, Erwin L., Sette, Alessandro, Schlessinger, Avner, Sollner, Johannes, Zand, Martin, Peters, Bjoern
Published in Journal of molecular recognition (01.03.2007)
Published in Journal of molecular recognition (01.03.2007)
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Journal Article
The immune epitope database and analysis resource: from vision to blueprint
Peters, Bjoern, Sidney, John, Bourne, Phil, Bui, Huynh-Hoa, Buus, Soeren, Doh, Grace, Fleri, Ward, Kronenberg, Mitch, Kubo, Ralph, Lund, Ole, Nemazee, David, Ponomarenko, Julia V, Sathiamurthy, Muthu, Schoenberger, Stephen, Stewart, Scott, Surko, Pamela, Way, Scott, Wilson, Steve, Sette, Alessandro
Published in PLoS biology (01.03.2005)
Published in PLoS biology (01.03.2005)
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Journal Article
Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications
Bui, Huynh-Hoa, Sidney, John, Peters, Bjoern, Sathiamurthy, Muthuraman, Sinichi, Asabe, Purton, Kelly-Anne, Mothé, Bianca R, Chisari, Francis V, Watkins, David I, Sette, Alessandro
Published in Immunogenetics (New York) (01.06.2005)
Published in Immunogenetics (New York) (01.06.2005)
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Journal Article
HLA Class I-Restricted Responses to Vaccinia Recognize a Broad Array of Proteins Mainly Involved in Virulence and Viral Gene Regulation
Oseroff, Carla, Kos, Ferdynand, Bui, Huynh-Hoa, Peters, Bjoern, Pasquetto, Valerie, Glenn, Jean, Palmore, Tara, Sidney, John, Tscharke, David C., Bennink, Jack R., Southwood, Scott, Grey, Howard M., Yewdell, Jonathan W., Sette, Alessandro
Published in Proceedings of the National Academy of Sciences - PNAS (27.09.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (27.09.2005)
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