Comparative transcriptomics in human and mouse
Breschi, Alessandra, Gingeras, Thomas R., Guigó, Roderic
Published in Nature reviews. Genetics (01.07.2017)
Published in Nature reviews. Genetics (01.07.2017)
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Journal Article
Glucotypes reveal new patterns of glucose dysregulation
Hall, Heather, Perelman, Dalia, Breschi, Alessandra, Limcaoco, Patricia, Kellogg, Ryan, McLaughlin, Tracey, Snyder, Michael
Published in PLoS biology (24.07.2018)
Published in PLoS biology (24.07.2018)
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Journal Article
Gene-specific patterns of expression variation across organs and species
Breschi, Alessandra, Djebali, Sarah, Gillis, Jesse, Pervouchine, Dmitri D, Dobin, Alex, Davis, Carrie A, Gingeras, Thomas R, Guigó, Roderic
Published in Genome Biology (08.07.2016)
Published in Genome Biology (08.07.2016)
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Journal Article
Comparison of the transcriptional landscapes between human and mouse tissues
Lin, Shin, Lin, Yiing, Nery, Joseph R., Urich, Mark A., Breschi, Alessandra, Davis, Carrie A., Dobin, Alexander, Zaleski, Christopher, Beer, Michael A., Chapman, William C., Gingeras, Thomas R., Ecker, Joseph R., Snyder, Michael P.
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
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Journal Article
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
Ferreira, Pedro G., Muñoz-Aguirre, Manuel, Reverter, Ferran, Sá Godinho, Caio P., Sousa, Abel, Amadoz, Alicia, Sodaei, Reza, Hidalgo, Marta R., Pervouchine, Dmitri, Carbonell-Caballero, Jose, Nurtdinov, Ramil, Breschi, Alessandra, Amador, Raziel, Oliveira, Patrícia, Çubuk, Cankut, Curado, João, Aguet, François, Oliveira, Carla, Dopazo, Joaquin, Sammeth, Michael, Ardlie, Kristin G., Guigó, Roderic
Published in Nature communications (13.02.2018)
Published in Nature communications (13.02.2018)
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Journal Article
Publication
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
Pervouchine, Dmitri D., Djebali, Sarah, Breschi, Alessandra, Davis, Carrie A., Barja, Pablo Prieto, Dobin, Alex, Tanzer, Andrea, Lagarde, Julien, Zaleski, Chris, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Wang, Huaien, Bussotti, Giovanni, Pei, Baikang, Balasubramanian, Suganthi, Monlong, Jean, Harmanci, Arif, Gerstein, Mark, Beer, Michael A., Notredame, Cedric, Guigó, Roderic, Gingeras, Thomas R.
Published in Nature communications (13.01.2015)
Published in Nature communications (13.01.2015)
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Journal Article
bsAS, an antisense long non-coding RNA, essential for correct wing development through regulation of blistered/DSRF isoform usage
Pérez-Lluch, Sílvia, Klein, Cecilia C, Breschi, Alessandra, Ruiz-Romero, Marina, Abad, Amaya, Palumbo, Emilio, Bekish, Lyazzat, Arnan, Carme, Guigó, Roderic
Published in PLoS genetics (28.12.2020)
Published in PLoS genetics (28.12.2020)
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Journal Article
The histone code reader PHD finger protein 7 controls sex-linked disparities in gene expression and malignancy in Drosophila
Molnar, Cristina, Heinen, Jan Peter, Reina, Jose, Llamazares, Salud, Palumbo, Emilio, Breschi, Alessandra, Gay, Marina, Villarreal, Laura, Vilaseca, Marta, Pollarolo, Giulia, Gonzalez, Cayetano
Published in Science advances (01.08.2019)
Published in Science advances (01.08.2019)
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Journal Article
Real-world data to enable large-scale assessment of WHO CNS5 glioma classification
Kapilivsky, Joshuah, Hatanpaa, Kimmo J., Manghnani, Kabir, Taxter, Timothy J., Stumpe, Martin, Guinney, Justin, Beauchamp, Kyle A., Buerki, Robin Arthur, Breschi, Alessandra
Published in Journal of clinical oncology (01.06.2022)
Published in Journal of clinical oncology (01.06.2022)
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Journal Article
A limited set of transcriptional programs define major cell types
Breschi, Alessandra, Muñoz-Aguirre, Manuel, Wucher, Valentin, Davis, Carrie A, Garrido-Martín, Diego, Djebali, Sarah, Gillis, Jesse, Pervouchine, Dmitri D, Vlasova, Anna, Dobin, Alexander, Zaleski, Chris, Drenkow, Jorg, Danyko, Cassidy, Scavelli, Alexandra, Reverter, Ferran, Snyder, Michael P, Gingeras, Thomas R, Guigó, Roderic
Published in Genome research (01.07.2020)
Published in Genome research (01.07.2020)
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Journal Article
Use of clinical RNA-sequencing in the detection of actionable fusions compared to DNA-sequencing alone
Michuda, Jackson, Park, Ben Ho, Cummings, Amy Lauren, Devarakonda, Siddhartha, O'Neil, Bert, Islam, Sumaiya, Parsons, Jerod, Ben-Shachar, Rotem, Breschi, Alessandra, Blackwell, Kimberly L., Chen, James Lin, Dudley, Joel, Stumpe, Martin, Guinney, Justin, Cohen, Ezra E.W.
Published in Journal of clinical oncology (01.06.2022)
Published in Journal of clinical oncology (01.06.2022)
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Journal Article
Dynamics of microRNA expression during mouse prenatal development
Rahmanian, Sorena, Murad, Rabi, Breschi, Alessandra, Zeng, Weihua, Mackiewicz, Mark, Williams, Brian, Davis, Carrie A, Roberts, Brian, Meadows, Sarah, Moore, Dianna, Trout, Diane, Zaleski, Chris, Dobin, Alex, Sei, Lei-Hoon, Drenkow, Jorg, Scavelli, Alex, Gingeras, Thomas R, Wold, Barbara J, Myers, Richard M, Guigó, Roderic, Mortazavi, Ali
Published in Genome research (01.11.2019)
Published in Genome research (01.11.2019)
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Journal Article
Abstract 5423: Multimodal prediction of diagnosis for cancers of unknown primary
Michuda, Jackson, Leibowitz, Benjamin, Amar-Farkash, Shlomit, Bevis, Crystal, Breschi, Alessandra, Kapilivsky, Joshuah, Igartua, Catherine, Bell, Joshua S., Beauchamp, Kyle A., White, Kevin, Stumpe, Martin, Beaubier, Nike, Taxter, Timothy
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Validation of a Transcriptome-Based Assay for Classifying Cancers of Unknown Primary Origin
Michuda, Jackson, Breschi, Alessandra, Kapilivsky, Joshuah, Manghnani, Kabir, McCarter, Calvin, Hockenberry, Adam J., Mineo, Brittany, Igartua, Catherine, Dudley, Joel T., Stumpe, Martin C., Beaubier, Nike, Shirazi, Maryam, Jones, Ryan, Morency, Elizabeth, Blackwell, Kim, Guinney, Justin, Beauchamp, Kyle A., Taxter, Timothy
Published in Molecular diagnosis & therapy (01.07.2023)
Published in Molecular diagnosis & therapy (01.07.2023)
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Journal Article
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
Ferreira, Pedro G, Muñoz-Aguirre, Manuel, Reverter Comes, Ferran, Godinho, Caio P. Sá, Sousa, Abel, Amadoz, Alicia, Sodaei, Reza, Hidalgo, Marta R, Pervouchine, Dmitri D, Carbonell-Caballero, Jose, Nurtdinov, Ramil, Breschi, Alessandra, 1988, Amador, Raziel, Oliveira, Patrícia, Çubut, Cankut, Curado, Joao, Aguet, François, Oliveira, Carla, Dopazo, Joaquín, Sammeth, Michael, Ardlie, Kristin G, Guigó Serra, Roderic
Published in Nature communications (2018)
Published in Nature communications (2018)
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Journal Article
The molecular basis of the cellular taxonomy of the human body
Breschi, Alessandra, Davis, Carrie, Djebali, Sarah, Gillis, Jesse, Pervouchine, Dmitri D., Vlasova, Anna, Dobin, Alex, Zaleski, Chris, Drenkow, Jorg, Danyko, Cassidy, Scavelli, Alexandra, Munoz, Manuel, Garrido, Diego, Reverter, Ferran, Gingeras, Thomas R., Guigo, Roderic
Published in Human genomics (2018)
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Published in Human genomics (2018)
Journal Article
METHODS AND SYSTEMS FOR DETECTING ALTERNATIVE SPLICING IN SEQUENCING DATA
LEIBOWITZ, Benjamin, BRESCHI, Alessandra, BELL, Joshua, MICHUDA, Jackson, DREWS, Joshua
Year of Publication 02.05.2024
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Year of Publication 02.05.2024
Patent
METHODS AND SYSTEMS FOR DETECTING ALTERNATIVE SPLICING IN SEQUENCING DATA
LEIBOWITZ, Benjamin, BRESCHI, Alessandra, BELL, Joshua, MICHUDA, Jackson, DREWS, Joshua
Year of Publication 20.04.2023
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Year of Publication 20.04.2023
Patent