MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
Chong, Jasmine, Soufan, Othman, Li, Carin, Caraus, Iurie, Li, Shuzhao, Bourque, Guillaume, Wishart, David S, Xia, Jianguo
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy
Couturier, Charles P, Ayyadhury, Shamini, Le, Phuong U, Nadaf, Javad, Monlong, Jean, Riva, Gabriele, Allache, Redouane, Baig, Salma, Yan, Xiaohua, Bourgey, Mathieu, Lee, Changseok, Wang, Yu Chang David, Wee Yong, V, Guiot, Marie-Christine, Najafabadi, Hamed, Misic, Bratislav, Antel, Jack, Bourque, Guillaume, Ragoussis, Jiannis, Petrecca, Kevin
Published in Nature communications (08.07.2020)
Published in Nature communications (08.07.2020)
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The majority of primate-specific regulatory sequences are derived from transposable elements
Jacques, Pierre-Étienne, Jeyakani, Justin, Bourque, Guillaume
Published in PLoS genetics (01.05.2013)
Published in PLoS genetics (01.05.2013)
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Ten things you should know about transposable elements
Bourque, Guillaume, Burns, Kathleen H, Gehring, Mary, Gorbunova, Vera, Seluanov, Andrei, Hammell, Molly, Imbeault, Michaël, Izsvák, Zsuzsanna, Levin, Henry L, Macfarlan, Todd S, Mager, Dixie L, Feschotte, Cédric
Published in Genome Biology (19.11.2018)
Published in Genome Biology (19.11.2018)
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Journal Article
CTCF-mediated functional chromatin interactome in pluripotent cells
Ruan, Yijun, Wei, Chia-Lin, Handoko, Lusy, Xu, Han, Li, Guoliang, Ngan, Chew Yee, Chew, Elaine, Schnapp, Marie, Lee, Charlie Wah Heng, Ye, Chaopeng, Ping, Joanne Lim Hui, Mulawadi, Fabianus, Wong, Eleanor, Sheng, Jianpeng, Zhang, Yubo, Poh, Thompson, Chan, Chee Seng, Kunarso, Galih, Shahab, Atif, Bourque, Guillaume, Cacheux-Rataboul, Valere, Sung, Wing-Kin
Published in Nature genetics (01.07.2011)
Published in Nature genetics (01.07.2011)
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Journal Article
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
Kapusta, Aurélie, Kronenberg, Zev, Lynch, Vincent J, Zhuo, Xiaoyu, Ramsay, LeeAnn, Bourque, Guillaume, Yandell, Mark, Feschotte, Cédric
Published in PLoS genetics (01.04.2013)
Published in PLoS genetics (01.04.2013)
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Journal Article
Personalized and graph genomes reveal missing signal in epigenomic data
Groza, Cristian, Kwan, Tony, Soranzo, Nicole, Pastinen, Tomi, Bourque, Guillaume
Published in Genome Biology (25.05.2020)
Published in Genome Biology (25.05.2020)
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A coordinated progression of progenitor cell states initiates urinary tract development
Sanchez-Ferras, Oraly, Pacis, Alain, Sotiropoulou, Maria, Zhang, Yuhong, Wang, Yu Chang, Bourgey, Mathieu, Bourque, Guillaume, Ragoussis, Jiannis, Bouchard, Maxime
Published in Nature communications (11.05.2021)
Published in Nature communications (11.05.2021)
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Journal Article
The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
Lu, Xinyi, Sachs, Friedrich, Ramsay, LeeAnn, Jacques, Pierre-Étienne, Göke, Jonathan, Bourque, Guillaume, Ng, Huck-Hui
Published in Nature structural & molecular biology (01.04.2014)
Published in Nature structural & molecular biology (01.04.2014)
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Journal Article
Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity
Caron, Maxime, St-Onge, Pascal, Sontag, Thomas, Wang, Yu Chang, Richer, Chantal, Ragoussis, Ioannis, Sinnett, Daniel, Bourque, Guillaume
Published in Scientific reports (15.05.2020)
Published in Scientific reports (15.05.2020)
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Journal Article
K27M mutation in histone H3.3 defines clinically and biologically distinct subgroups of pediatric diffuse intrinsic pontine gliomas
Khuong-Quang, Dong-Anh, Buczkowicz, Pawel, Rakopoulos, Patricia, Liu, Xiao-Yang, Fontebasso, Adam M., Bouffet, Eric, Bartels, Ute, Albrecht, Steffen, Schwartzentruber, Jeremy, Letourneau, Louis, Bourgey, Mathieu, Bourque, Guillaume, Montpetit, Alexandre, Bourret, Genevieve, Lepage, Pierre, Fleming, Adam, Lichter, Peter, Kool, Marcel, von Deimling, Andreas, Sturm, Dominik, Korshunov, Andrey, Faury, Damien, Jones, David T., Majewski, Jacek, Pfister, Stefan M., Jabado, Nada, Hawkins, Cynthia
Published in Acta neuropathologica (01.09.2012)
Published in Acta neuropathologica (01.09.2012)
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Single-cell analysis of human adipose tissue identifies depot and disease specific cell types
Vijay, Jinchu, Gauthier, Marie-Frédérique, Biswell, Rebecca L, Louiselle, Daniel A, Johnston, Jeffrey J, Cheung, Warren A, Belden, Bradley, Pramatarova, Albena, Biertho, Laurent, Gibson, Margaret, Simon, Marie-Michelle, Djambazian, Haig, Staffa, Alfredo, Bourque, Guillaume, Laitinen, Anita, Nystedt, Johanna, Vohl, Marie-Claude, Fraser, Jason D, Pastinen, Tomi, Tchernof, André, Grundberg, Elin
Published in Nature metabolism (01.01.2020)
Published in Nature metabolism (01.01.2020)
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Journal Article
Ultrafast functional profiling of RNA-seq data for nonmodel organisms
Liu, Peng, Ewald, Jessica, Galvez, Jose Hector, Head, Jessica, Crump, Doug, Bourque, Guillaume, Basu, Niladri, Xia, Jianguo
Published in Genome research (01.04.2021)
Published in Genome research (01.04.2021)
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Journal Article
Nuclear mTOR acts as a transcriptional integrator of the androgen signaling pathway in prostate cancer
Audet-Walsh, Étienne, Dufour, Catherine R, Yee, Tracey, Zouanat, Fatima Z, Yan, Ming, Kalloghlian, Georges, Vernier, Mathieu, Caron, Maxime, Bourque, Guillaume, Scarlata, Eleonora, Hamel, Lucie, Brimo, Fadi, Aprikian, Armen G, Lapointe, Jacques, Chevalier, Simone, Giguère, Vincent
Published in Genes & development (15.06.2017)
Published in Genes & development (15.06.2017)
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Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations
Breeze, Charles E, Haugen, Eric, Reynolds, Alex, Teschendorff, Andrew, van Dongen, Jenny, Lan, Qing, Rothman, Nathaniel, Bourque, Guillaume, Dunham, Ian, Beck, Stephan, Stamatoyannopoulos, John, Franceschini, Nora, Berndt, Sonja I
Published in Genome Biology (07.01.2022)
Published in Genome Biology (07.01.2022)
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Journal Article
Targeting EZH2 reactivates a breast cancer subtype-specific anti-metastatic transcriptional program
Hirukawa, Alison, Smith, Harvey W, Zuo, Dongmei, Dufour, Catherine R, Savage, Paul, Bertos, Nicholas, Johnson, Radia M, Bui, Tung, Bourque, Guillaume, Basik, Mark, Giguère, Vincent, Park, Morag, Muller, William J
Published in Nature communications (29.06.2018)
Published in Nature communications (29.06.2018)
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