The microglial sensome revealed by direct RNA sequencing
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Published in Nature neuroscience (01.12.2013)
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Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming
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Published in Cell stem cell (06.06.2013)
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genomic binding sites of a noncoding RNA
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Published in Proceedings of the National Academy of Sciences - PNAS (20.12.2011)
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Sequencing Chromosomal Abnormalities Reveals Neurodevelopmental Loci that Confer Risk across Diagnostic Boundaries
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Published in Cell (27.04.2012)
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Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration
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Published in Nature genetics (01.04.2012)
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Ten simple rules to power drug discovery with data science
Ferrero, Enrico, Brachat, Sophie, Jenkins, Jeremy L, Marc, Philippe, Skewes-Cox, Peter, Altshuler, Robert C, Gubser Keller, Caroline, Kauffmann, Audrey, Sassaman, Erik K, Laramie, Jason M, Schoeberl, Birgit, Borowsky, Mark L, Stiefl, Nikolaus
Published in PLoS computational biology (27.08.2020)
Published in PLoS computational biology (27.08.2020)
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RNA signatures allow rapid identification of pathogens and antibiotic susceptibilities
Barczak, Amy K, Gomez, James E, Kaufmann, Benjamin B, Hinson, Ella R, Cosimi, Lisa, Borowsky, Mark L, Onderdonk, Andrew B, Stanley, Sarah A, Kaur, Devinder, Bryant, Kevin F, Knipe, David M, Sloutsky, Alexander, Hung, Deborah T
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Published in Proceedings of the National Academy of Sciences - PNAS (17.04.2012)
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Short-term genome evolution of Listeria monocytogenes in a non-controlled environment
Orsi, Renato H, Borowsky, Mark L, Lauer, Peter, Young, Sarah K, Nusbaum, Chad, Galagan, James E, Birren, Bruce W, Ivy, Reid A, Sun, Qi, Graves, Lewis M, Swaminathan, Bala, Wiedmann, Martin
Published in BMC genomics (13.11.2008)
Published in BMC genomics (13.11.2008)
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Histone H3R2 Symmetric Dimethylation and Histone H3K4 Trimethylation Are Tightly Correlated in Eukaryotic Genomes
Yuan, Chih-Chi, Matthews, Adam G.W., Jin, Yi, Chen, Chang Feng, Chapman, Brad A., Ohsumi, Toshiro K., Glass, Karen C., Kutateladze, Tatiana G., Borowsky, Mark L., Struhl, Kevin, Oettinger, Marjorie A.
Published in Cell reports (Cambridge) (23.02.2012)
Published in Cell reports (Cambridge) (23.02.2012)
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Atypical case of Wolfram syndrome revealed through targeted exome sequencing in a patient with suspected mitochondrial disease
Lieber, Daniel S, Vafai, Scott B, Horton, Laura C, Slate, Nancy G, Liu, Shangtao, Borowsky, Mark L, Calvo, Sarah E, Schmahmann, Jeremy D, Mootha, Vamsi K
Published in BMC medical genetics (06.01.2012)
Published in BMC medical genetics (06.01.2012)
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Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis
Farhat, Maha R, Shapiro, B Jesse, Kieser, Karen J, Sultana, Razvan, Jacobson, Karen R, Victor, Thomas C, Warren, Robin M, Streicher, Elizabeth M, Calver, Alistair, Sloutsky, Alex, Kaur, Devinder, Posey, Jamie E, Plikaytis, Bonnie, Oggioni, Marco R, Gardy, Jennifer L, Johnston, James C, Rodrigues, Mabel, Tang, Patrick K C, Kato-Maeda, Midori, Borowsky, Mark L, Muddukrishna, Bhavana, Kreiswirth, Barry N, Kurepina, Natalia, Galagan, James, Gagneux, Sebastien, Birren, Bruce, Rubin, Eric J, Lander, Eric S, Sabeti, Pardis C, Murray, Megan
Published in Nature genetics (01.10.2013)
Published in Nature genetics (01.10.2013)
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Targeted exome sequencing of suspected mitochondrial disorders
Lieber, Daniel S, Calvo, Sarah E, Shanahan, Kristy, Slate, Nancy G, Liu, Shangtao, Hershman, Steven G, Gold, Nina B, Chapman, Brad A, Thorburn, David R, Berry, Gerard T, Schmahmann, Jeremy D, Borowsky, Mark L, Mueller, David M, Sims, Katherine B, Mootha, Vamsi K
Published in Neurology (07.05.2013)
Published in Neurology (07.05.2013)
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CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development
Ray, Mridula K., Wiskow, Ole, King, Matthew J., Ismail, Nidha, Ergun, Ayla, Wang, Yanqun, Plys, Aaron J., Davis, Christopher P., Kathrein, Katie, Sadreyev, Ruslan, Borowsky, Mark L., Eggan, Kevin, Zon, Leonard, Galloway, Jenna L., Kingston, Robert E.
Published in The Journal of biological chemistry (09.09.2016)
Published in The Journal of biological chemistry (09.09.2016)
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Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination
Pulivarthy, Sandhya R., Lion, Mattia, Kuzu, Guray, Matthews, Adam G. W., Borowsky, Mark L., Morris, John, Kingston, Robert E., Dennis, Jonathan H., Tolstorukov, Michael Y., Oettinger, Marjorie A.
Published in Proceedings of the National Academy of Sciences - PNAS (18.10.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (18.10.2016)
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Multiplexed Illumina sequencing libraries from picogram quantities of DNA
Bowman, Sarah K, Simon, Matthew D, Deaton, Aimee M, Tolstorukov, Michael, Borowsky, Mark L, Kingston, Robert E
Published in BMC genomics (09.07.2013)
Published in BMC genomics (09.07.2013)
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The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed
Sexton, Brittany S, Avey, Denis, Druliner, Brooke R, Fincher, Justin A, Vera, Daniel L, Grau, Daniel J, Borowsky, Mark L, Gupta, Shobhit, Girimurugan, Senthil B, Chicken, Eric, Zhang, Jinfeng, Noble, William S, Zhu, Fanxiu, Kingston, Robert E, Dennis, Jonathan H
Published in Genome research (01.02.2014)
Published in Genome research (01.02.2014)
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Analysis of the DNA sequence and duplication history of human chromosome 15
Zody, Michael C, Nusbaum, Chad, Garber, Manuel, Sharpe, Ted, Young, Sarah K, Rowen, Lee, O'Neill, Keith, Whittaker, Charles A, Kamal, Michael, Chang, Jean L, Cuomo, Christina A, Dewar, Ken, FitzGerald, Michael G, Kodira, Chinnappa D, Madan, Anup, Qin, Shizhen, Yang, Xiaoping, Abbasi, Nissa, Abouelleil, Amr, Arachchi, Harindra M, Baradarani, Lida, Birditt, Brian, Bloom, Scott, Bloom, Toby, Borowsky, Mark L, Burke, Jeremy, Butler, Jonathan, Cook, April, DeArellano, Kurt, DeCaprio, David, Dorris, Lester, Dors, Monica, Eichler, Evan E, Engels, Reinhard, Fahey, Jessica, Fleetwood, Peter, Friedman, Cynthia, Gearin, Gary, Hall, Jennifer L, Hensley, Grace, Johnson, Ericka, Jones, Charlien, Kamat, Asha, Kaur, Amardeep, Locke, Devin P, Madan, Anuradha, Munson, Glen, Jaffe, David B, Lui, Annie, Macdonald, Pendexter, Mauceli, Evan, Naylor, Jerome W, Nesbitt, Ryan, Nicol, Robert, O'Leary, Sinéad B, Ratcliffe, Amber, Rounsley, Steven, She, Xinwei, Sneddon, Katherine M. B, Stewart, Sandra, Sougnez, Carrie, Stone, Sabrina M, Topham, Kerri, Vincent, Dascena, Wang, Shunguang, Zimmer, Andrew R, Birren, Bruce W, Hood, Leroy, Lander, Eric S
Published in Nature (30.03.2006)
Published in Nature (30.03.2006)
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Posterior stripe expression of hunchback is driven from two promoters by a common enhancer element
Margolis, J S, Borowsky, M L, Steingrímsson, E, Shim, C W, Lengyel, J A, Posakony, J W
Published in Development (Cambridge) (01.09.1995)
Published in Development (Cambridge) (01.09.1995)
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