HIV-1 active and latent infections induce disparate chromatin reorganization and transcriptional regulation of mRNAs and lncRNAs in SupT1 cells
Lê-Bury, Gabrielle, Chen, Yao, Rhen, Jordan M, Grenier, Jennifer K, Singhal, Amit, Russell, David G, Boliar, Saikat
Published in mBio (19.12.2023)
Published in mBio (19.12.2023)
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TZM-gfp cells: a tractable fluorescent tool for analysis of rare and early HIV-1 infection
Gludish, David W, Boliar, Saikat, Caldwell, Shannon, Tembo, Dumizulu L, Chimbayo, Elizabeth T, Jambo, Kondwani C, Mwandumba, Henry C, Russell, David G
Published in Scientific reports (16.11.2020)
Published in Scientific reports (16.11.2020)
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Cell surface ectodomain integrity of a subset of functional HIV-1 envelopes is dependent on a conserved hydrophilic domain containing region in their C-terminal tail
Samal, Sweety, Das, Supratik, Boliar, Saikat, Qureshi, Huma, Shrivastava, Tripti, Kumar, Naresh, Goswami, Sandeep, Bansal, Manish, Chakrabarti, Bimal K
Published in Retrovirology (20.07.2018)
Published in Retrovirology (20.07.2018)
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Journal Article
Conformational Epitope-Specific Broadly Neutralizing Plasma Antibodies Obtained from an HIV-1 Clade C-Infected Elite Neutralizer Mediate Autologous Virus Escape through Mutations in the V1 Loop
Patil, Shilpa, Kumar, Rajesh, Deshpande, Suprit, Samal, Sweety, Shrivastava, Tripti, Boliar, Saikat, Bansal, Manish, Chaudhary, Nakul Kumar, Srikrishnan, Aylur K, Murugavel, Kailapuri G, Solomon, Suniti, Simek, Melissa, Koff, Wayne C, Goyal, Rajat, Chakrabarti, Bimal K, Bhattacharya, Jayanta
Published in Journal of virology (01.04.2016)
Published in Journal of virology (01.04.2016)
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Journal Article
Ligand accessibility to the HIV-1 Env co-receptor binding site can occur prior to CD4 engagement and is independent of viral tier category
Boliar, Saikat, Patil, Shilpa, Shukla, Brihaspati N., Ghobbeh, Ali, Deshpande, Suprit, Chen, Weizao, Guenaga, Javier, Dimitrov, Dimiter S., Wyatt, Richard T., Chakrabarti, Bimal K.
Published in Virology (New York, N.Y.) (01.06.2018)
Published in Virology (New York, N.Y.) (01.06.2018)
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Journal Article
The B Cell Response Is Redundant and Highly Focused on V1V2 during Early Subtype C Infection in a Zambian Seroconverter
Lynch, Rebecca M, Rong, Rong, Boliar, Saikat, Sethi, Anurag, Li, Bing, Mulenga, Joseph, Allen, Susan, Robinson, James E, Gnanakaran, S, Derdeyn, Cynthia A
Published in Journal of Virology (01.01.2011)
Published in Journal of Virology (01.01.2011)
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Journal Article
B-Lymphocyte Dysfunction in Chronic HIV-1 Infection Does Not Prevent Cross-Clade Neutralization Breadth
BOLIAR, Saikat, MURPHY, Megan K, CAMERON TRAN, T, CARNATHAN, Diane G, ARMSTRONG, Wendy S, SILVESTRI, Guido, DERDEYN, Cynthia A
Published in Journal of Virology (01.08.2012)
Published in Journal of Virology (01.08.2012)
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Journal Article
An efficiently cleaved HIV-1 clade C Env selectively binds to neutralizing antibodies
Boliar, Saikat, Das, Supratik, Bansal, Manish, Shukla, Brihaspati N, Patil, Shilpa, Shrivastava, Tripti, Samal, Sweety, Goswami, Sandeep, King, C Richter, Bhattacharya, Jayanta, Chakrabarti, Bimal K
Published in PloS one (30.03.2015)
Published in PloS one (30.03.2015)
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Journal Article
Viral escape from neutralizing antibodies in early subtype A HIV-1 infection drives an increase in autologous neutralization breadth
Murphy, Megan K, Yue, Ling, Pan, Ruimin, Boliar, Saikat, Sethi, Anurag, Tian, Jianhui, Pfafferot, Katja, Karita, Etienne, Allen, Susan A, Cormier, Emmanuel, Goepfert, Paul A, Borrow, Persephone, Robinson, James E, Gnanakaran, S, Hunter, Eric, Kong, Xiang-Peng, Derdeyn, Cynthia A
Published in PLoS pathogens (01.02.2013)
Published in PLoS pathogens (01.02.2013)
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Journal Article
Development and Evaluation of One-Step TaqMan Real-Time Reverse Transcription-PCR Assays Targeting Nucleoprotein, Matrix, and Hemagglutinin Genes of Equine Influenza Virus
Lu, Zhengchun, Chambers, Thomas M, Boliar, Saikat, Branscum, Adam J, Sturgill, Tracy L, Timoney, Peter J, Reedy, Stephanie E, Tudor, Lynn R, Dubovi, Edward J, Vickers, Mary Lynne, Sells, Stephen, Balasuriya, Udeni B.R
Published in Journal of Clinical Microbiology (01.12.2009)
Published in Journal of Clinical Microbiology (01.12.2009)
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Journal Article
Inhibition of the lncRNA SAF drives activation of apoptotic effector caspases in HIV-1–infected human macrophages
Boliar, Saikat, Gludish, David W., Jambo, Kondwani C., Kamng’ona, Raphael, Mvaya, Leonard, Mwandumba, Henry C., Russell, David G.
Published in Proceedings of the National Academy of Sciences - PNAS (09.04.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (09.04.2019)
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Journal Article
Identification and characterization of a naturally occurring, efficiently cleaved, membrane-bound, clade A HIV-1 Env, suitable for immunogen design, with properties comparable to membrane-bound BG505
Das, Supratik, Boliar, Saikat, Samal, Sweety, Ahmed, Shubbir, Shrivastava, Tripti, Shukla, Brihaspati N., Goswami, Sandeep, Bansal, Manish, Chakrabarti, Bimal K.
Published in Virology (New York, N.Y.) (01.10.2017)
Published in Virology (New York, N.Y.) (01.10.2017)
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Journal Article
A novel, sensitive dual-indicator cell line for detection and quantification of inducible, replication-competent latent HIV-1 from reservoir cells
Salasc, Fanny, Gludish, David W, Jarvis, Isobel, Boliar, Saikat, Wills, Mark R, Russell, David G, Lever, Andrew M L, Mok, Hoi-Ping
Published in Scientific reports (18.12.2019)
Published in Scientific reports (18.12.2019)
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Journal Article
Membrane bound modified form of clade B Env, JRCSF is suitable for immunogen design as it is efficiently cleaved and displays all the broadly neutralizing epitopes including V2 and C2 domain-dependent conformational epitopes
Das, Supratik, Boliar, Saikat, Mitra, Nivedita, Samal, Sweety, Bansal, Manish, Koff, Wayne C, Chakrabarti, Bimal K
Published in Retrovirology (21.11.2016)
Published in Retrovirology (21.11.2016)
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Journal Article
Heterogeneous loss of HIV transcription and proviral DNA from 8E5/LAV lymphoblastic leukemia cells revealed by RNA FISH:FLOW analyses
Wilburn, Kaley M, Mwandumba, Henry C, Jambo, Kondwani C, Boliar, Saikat, Solouki, Sabrina, Russell, David G, Gludish, David W
Published in Retrovirology (11.08.2016)
Published in Retrovirology (11.08.2016)
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Journal Article
Determinants in V2C2 region of HIV-1 clade C primary envelopes conferred altered neutralization susceptibilities to IgG1b12 and PG9 monoclonal antibodies in a context-dependent manner
Patil, Shilpa, Choudhary, Ipsita, Chaudhary, Nakul K, Ringe, Rajesh, Bansal, Manish, Shukla, Brihaspati Narayan, Boliar, Saikat, Chakrabarti, Bimal K, Bhattacharya, Jayanta
Published in Virology (New York, N.Y.) (01.08.2014)
Published in Virology (New York, N.Y.) (01.08.2014)
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Journal Article
Immune exposure to a specific sequence of antibody escape variants could program long-term potential for neutralization breadth in subtype A HIV-1 infection (P6161)
Murphy, Megan, Yue, Ling, Pan, Ruimin, Boliar, Saikat, Sethi, Anurag, Tian, Jianhui, Karita, Etienne, Allen, Susan, Cormier, Emmanuel, Robinson, James, Gnanakaran, S., Hunter, Eric, Kong, Xiang-Peng, Derdeyn, Cynthia
Published in The Journal of immunology (1950) (01.05.2013)
Published in The Journal of immunology (1950) (01.05.2013)
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