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Published in Proceedings of the National Academy of Sciences - PNAS (23.02.2010)
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Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers
Boja, Emily S, Fehniger, Thomas E, Baker, Mark S, Marko-Varga, György, Rodriguez, Henry
Published in Journal of proteome research (05.12.2014)
Published in Journal of proteome research (05.12.2014)
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Residual tissue repositories as a resource for population-based cancer proteomic studies
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Published in Clinical proteomics (03.08.2018)
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Structural Characterization of Native Mouse Zona Pellucida Proteins Using Mass Spectrometry
Boja, Emily S., Hoodbhoy, Tanya, Fales, Henry M., Dean, Jurrien
Published in The Journal of biological chemistry (05.09.2003)
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Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
Satpathy, Shankha, Cao, Song, Dhanasekaran, Saravana M., Vasaikar, Suhas V., Petralia, Francesca, Liang, Wen-Wei, Krek, Azra, Hong, Runyu, Blumenberg, Lili, Wendl, Michael C., Wen, Bo, Tang, Lauren C., MacMullan, Melanie A., Kane, M. Harry, Newton, Chelsea J., Cornwell, MacIntosh, Yoo, Seungyeul, Mannan, Rahul, Vats, Pankaj, Kumar-Sinha, Chandan, Colaprico, Antonio, Geffen, Yifat, Wiznerowicz, Maciej, Gümüş, Zeynep H., Veluswamy, Rajwanth R., Hostetter, Galen, Mesri, Mehdi, Boja, Emily S., Omenn, Gilbert S., Thiagarajan, Mathangi, Getz, Gad, Cieslik, Marcin P., Govindan, Ramaswamy, Wang, Pei, Nesvizhskii, Alexey I., Ding, Li, Mani, D.R., Francis, Alicia, Charamut, Alyssa, Paulovich, Amanda G., Karnuta, Andrii, Hindenach, Barbara, Druker, Brian J., Birger, Chet, Jones, Corbin D., Rohrer, Daniel C., Zhou, Daniel Cui, Chan, Daniel W., Chesla, David, Clark, David J., Tan, Donghui, Duffy, Elizabeth, Bergstrom, Erik J., Wilson, George D., Chen, Hai-Quan, Sun, Hua, Whiteaker, Jeffrey R., Rodland, Karin D., Hoadley, Katherine A., Elburn, Kim, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Wojtyś, Małgorzata, Domagalski, Marcin J., Beasley, Mary B., Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Schnaubelt, Michael, Chaikin, Michelle, Selvan, Myvizhi Esai, McGarvey, Peter B., Thangudu, Ratna R., Smith, Richard D., Welsh, Robert J., Zelt, Robert, Mehra, Rohit, Matteotti, Ronald, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Chugh, Seema, Smith, Shaleigh, Tsang, Shirley, Cai, Shuang, Boca, Simina M., Stein, Stephen E., Krubit, Tanya, Skelly, Tara, Bauer, Thomas, Velvulou, Uma, Petyuk, Vladislav A., Bocik, William E., Maggio, William W., Chen, Xi, Wu, Yige, Shi, Zhiao
Published in Cell (09.07.2020)
Published in Cell (09.07.2020)
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Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
Krug, Karsten, Jaehnig, Eric J., Satpathy, Shankha, Blumenberg, Lili, Karpova, Alla, Anurag, Meenakshi, Miles, George, Mertins, Philipp, Geffen, Yifat, Tang, Lauren C., Heiman, David I., Cao, Song, Maruvka, Yosef E., Lei, Jonathan T., Huang, Chen, Kothadia, Ramani B., Colaprico, Antonio, Birger, Chet, Wang, Jarey, Dou, Yongchao, Wen, Bo, Shi, Zhiao, Liao, Yuxing, Wiznerowicz, Maciej, Wyczalkowski, Matthew A., Chen, Xi Steven, Kennedy, Jacob J., Paulovich, Amanda G., Thiagarajan, Mathangi, Kinsinger, Christopher R., Hiltke, Tara, Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Westbrook, Thomas F., Ding, Li, Getz, Gad, Clauser, Karl R., Fenyö, David, Ruggles, Kelly V., Zhang, Bing, Mani, D.R., Carr, Steven A., Ellis, Matthew J., Gillette, Michael A., Avanessian, Shayan C., Cai, Shuang, Chan, Daniel, Chen, Xian, Edwards, Nathan J., Hoofnagle, Andrew N., Kane, M. Harry, Ketchum, Karen A., Kuhn, Eric, Levine, Douglas A., Li, Shunqiang, Liebler, Daniel C., Liu, Tao, Luo, Jingqin, Madhavan, Subha, Maher, Chris, McDermott, Jason E., McGarvey, Peter B., Oberti, Mauricio, Pandey, Akhilesh, Payne, Samuel H., Ransohoff, David F., Rivers, Robert C., Rodland, Karin D., Rudnick, Paul, Sanders, Melinda E., Shaw, Kenna M., Shih, Ie-Ming, Slebos, Robbert J.C., Smith, Richard D., Snyder, Michael, Stein, Stephen E., Tabb, David L., Thangudu, Ratna R., Thomas, Stefani, Wang, Yue, White, Forest M., Whiteaker, Jeffrey R., Whiteley, Gordon A., Zhang, Hui, Zhang, Zhen, Zhao, Yingming, Zhu, Heng, Zimmerman, Lisa J.
Published in Cell (25.11.2020)
Published in Cell (25.11.2020)
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Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk
Ntai, Ioanna, Fornelli, Luca, DeHart, Caroline J., Hutton, Josiah E., Doubleday, Peter F., LeDuc, Richard D., van Nispen, Alexandra J., Fellers, Ryan T., Whiteley, Gordon, Boja, Emily S., Rodriguez, Henry, Kelleher, Neil L.
Published in Proceedings of the National Academy of Sciences - PNAS (17.04.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (17.04.2018)
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Mapping the KRAS proteoform landscape in colorectal cancer identifies truncated KRAS4B that decreases MAPK signaling
Adams, Lauren M., DeHart, Caroline J., Drown, Bryon S., Anderson, Lissa C., Bocik, William, Boja, Emily S., Hiltke, Tara M., Hendrickson, Christopher L., Rodriguez, Henry, Caldwell, Michael, Vafabakhsh, Reza, Kelleher, Neil L.
Published in The Journal of biological chemistry (01.01.2023)
Published in The Journal of biological chemistry (01.01.2023)
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Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction
Wang, Jing, Ma, Zihao, Carr, Steven A., Mertins, Philipp, Zhang, Hui, Zhang, Zhen, Chan, Daniel W., Ellis, Matthew J.C., Townsend, R. Reid, Smith, Richard D., McDermott, Jason E., Chen, Xian, Paulovich, Amanda G., Boja, Emily S., Mesri, Mehdi, Kinsinger, Christopher R., Rodriguez, Henry, Rodland, Karin D., Liebler, Daniel C., Zhang, Bing
Published in Molecular & cellular proteomics (01.01.2017)
Published in Molecular & cellular proteomics (01.01.2017)
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Specific Regulation of the Adaptor Protein Complex AP-3 by the Arf GAP AGAP1
Nie, Zhongzhen, Boehm, Markus, Boja, Emily S., Vass, William C., Bonifacino, Juan S., Fales, Henry M., Randazzo, Paul A.
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Published in Developmental cell (01.09.2003)
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Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry
Cho, Kyung-Cho, Clark, David J, Schnaubelt, Michael, Teo, Guo Ci, Leprevost, Felipe da Veiga, Bocik, William, Boja, Emily S, Hiltke, Tara, Nesvizhskii, Alexey I, Zhang, Hui
Published in Analytical chemistry (Washington) (17.03.2020)
Published in Analytical chemistry (Washington) (17.03.2020)
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Statistical Design for Biospecimen Cohort Size in Proteomics-based Biomarker Discovery and Verification Studies
Skates, Steven J, Gillette, Michael A, LaBaer, Joshua, Carr, Steven A, Anderson, Leigh, Liebler, Daniel C, Ransohoff, David, Rifai, Nader, Kondratovich, Marina, Težak, Živana, Mansfield, Elizabeth, Oberg, Ann L, Wright, Ian, Barnes, Grady, Gail, Mitchell, Mesri, Mehdi, Kinsinger, Christopher R, Rodriguez, Henry, Boja, Emily S
Published in Journal of proteome research (06.12.2013)
Published in Journal of proteome research (06.12.2013)
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Conference Proceeding
Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts
Ntai, Ioanna, LeDuc, Richard D., Fellers, Ryan T., Erdmann-Gilmore, Petra, Davies, Sherri R., Rumsey, Jeanne, Early, Bryan P., Thomas, Paul M., Li, Shunqiang, Compton, Philip D., Ellis, Matthew J.C., Ruggles, Kelly V., Fenyö, David, Boja, Emily S., Rodriguez, Henry, Townsend, R. Reid, Kelleher, Neil L.
Published in Molecular & cellular proteomics (01.01.2016)
Published in Molecular & cellular proteomics (01.01.2016)
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