Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
Daetwyler, Hans D, Capitan, Aurélien, Pausch, Hubert, Stothard, Paul, van Binsbergen, Rianne, Brøndum, Rasmus F, Liao, Xiaoping, Djari, Anis, Rodriguez, Sabrina C, Grohs, Cécile, Esquerré, Diane, Bouchez, Olivier, Rossignol, Marie-Noëlle, Klopp, Christophe, Rocha, Dominique, Fritz, Sébastien, Eggen, André, Bowman, Phil J, Coote, David, Chamberlain, Amanda J, Anderson, Charlotte, VanTassell, Curt P, Hulsegge, Ina, Goddard, Mike E, Guldbrandtsen, Bernt, Lund, Mogens S, Veerkamp, Roel F, Boichard, Didier A, Fries, Ruedi, Hayes, Ben J
Published in Nature genetics (01.08.2014)
Published in Nature genetics (01.08.2014)
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Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
Hou, Yali, Bickhart, Derek M, Hvinden, Miranda L, Li, Congjun, Song, Jiuzhou, Boichard, Didier A, Fritz, Sébastien, Eggen, André, DeNise, Sue, Wiggans, George R, Sonstegard, Tad S, Van Tassell, Curtis P, Liu, George E
Published in BMC genomics (06.08.2012)
Published in BMC genomics (06.08.2012)
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Sequence-based GWAS and post-GWAS analyses reveal a key role of SLC37A1, ANKH, and regulatory regions on bovine milk mineral content
Sanchez, Marie-Pierre, Rocha, Dominique, Charles, Mathieu, Boussaha, Mekki, Hozé, Chris, Brochard, Mickaël, Delacroix-Buchet, Agnès, Grosperrin, Philippe, Boichard, Didier
Published in Scientific reports (06.04.2021)
Published in Scientific reports (06.04.2021)
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Genetic parameters, genome-wide association study, and selection perspective on gestation length in 16 French cattle breeds
Jourdain, Jeanlin, Capitan, Aurélien, Saintilan, Romain, Hozé, Chris, Fouéré, Corentin, Fritz, Sébastien, Boichard, Didier, Barbat, Anne
Published in Journal of dairy science (01.10.2024)
Published in Journal of dairy science (01.10.2024)
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Comparing power and precision of within-breed and multibreed genome-wide association studies of production traits using whole-genome sequence data for 5 French and Danish dairy cattle breeds
van den Berg, Irene, Boichard, Didier, Lund, Mogens Sandø
Published in Journal of dairy science (01.11.2016)
Published in Journal of dairy science (01.11.2016)
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Genome-wide association study with imputed whole-genome sequence variants including large deletions for female fertility in 3 Nordic dairy cattle breeds
Mesbah-Uddin, Md, Guldbrandtsen, Bernt, Capitan, Aurélien, Lund, Mogens Sandø, Boichard, Didier, Sahana, Goutam
Published in Journal of dairy science (01.02.2022)
Published in Journal of dairy science (01.02.2022)
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Genetic architecture of individual variation in recombination rate on the X chromosome in cattle
Zhang, Junjie, Kadri, Naveen Kumar, Mullaart, Erik, Spelman, Richard, Fritz, Sébastien, Boichard, Didier, Charlier, Carole, Georges, Michel, Druet, Tom
Published in Heredity (01.11.2020)
Published in Heredity (01.11.2020)
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In silico identification of variations in microRNAs with a potential impact on dairy traits using whole ruminant genome SNP datasets
Bourdon, Céline, Boussaha, Mekki, Bardou, Philippe, Sanchez, Marie-Pierre, Le Guillou, Sandrine, Tribout, Thierry, Larroque, Hélène, Boichard, Didier, Rupp, Rachel, Le Provost, Fabienne, Tosser-Klopp, Gwenola
Published in Scientific reports (01.10.2021)
Published in Scientific reports (01.10.2021)
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Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle
Sanchez, Marie-Pierre, Govignon-Gion, Armelle, Croiseau, Pascal, Fritz, Sébastien, Hozé, Chris, Miranda, Guy, Martin, Patrice, Barbat-Leterrier, Anne, Letaïef, Rabia, Rocha, Dominique, Brochard, Mickaël, Boussaha, Mekki, Boichard, Didier
Published in Genetics selection evolution (Paris) (18.09.2017)
Published in Genetics selection evolution (Paris) (18.09.2017)
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Confirmed effects of candidate variants for milk production, udder health, and udder morphology in dairy cattle
Tribout, Thierry, Croiseau, Pascal, Lefebvre, Rachel, Barbat, Anne, Boussaha, Mekki, Fritz, Sébastien, Boichard, Didier, Hoze, Chris, Sanchez, Marie-Pierre
Published in Genetics selection evolution (Paris) (01.10.2020)
Published in Genetics selection evolution (Paris) (01.10.2020)
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Investigating the impact of paternal age, paternal heat stress, and estimation of non-genetic paternal variance on dairy cow phenotype
Fouéré, Corentin, Hozé, Chris, Besnard, Florian, Boussaha, Mekki, Boichard, Didier, Sanchez, Marie-Pierre
Published in Genetics selection evolution (Paris) (18.06.2024)
Published in Genetics selection evolution (Paris) (18.06.2024)
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Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle
Kadri, Naveen Kumar, Harland, Chad, Faux, Pierre, Cambisano, Nadine, Karim, Latifa, Coppieters, Wouter, Fritz, Sébastien, Mullaart, Erik, Baurain, Denis, Boichard, Didier, Spelman, Richard, Charlier, Carole, Georges, Michel, Druet, Tom
Published in Genome research (01.10.2016)
Published in Genome research (01.10.2016)
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Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2
Fritz, Sébastien, Capitan, Aurelien, Djari, Anis, Rodriguez, Sabrina C, Barbat, Anne, Baur, Aurélia, Grohs, Cécile, Weiss, Bernard, Boussaha, Mekki, Esquerré, Diane, Klopp, Christophe, Rocha, Dominique, Boichard, Didier
Published in PloS one (07.06.2013)
Published in PloS one (07.06.2013)
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X-linked genes influence various complex traits in dairy cattle
Sanchez, Marie-Pierre, Escouflaire, Clémentine, Baur, Aurélia, Bottin, Fiona, Hozé, Chris, Boussaha, Mekki, Fritz, Sébastien, Capitan, Aurélien, Boichard, Didier
Published in BMC genomics (19.06.2023)
Published in BMC genomics (19.06.2023)
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Meta-analysis for milk fat and protein percentage using imputed sequence variant genotypes in 94,321 cattle from eight cattle breeds
van den Berg, Irene, Xiang, Ruidong, Jenko, Janez, Pausch, Hubert, Boussaha, Mekki, Schrooten, Chris, Tribout, Thierry, Gjuvsland, Arne B, Boichard, Didier, Nordbø, Øyvind, Sanchez, Marie-Pierre, Goddard, Mike E
Published in Genetics selection evolution (Paris) (07.07.2020)
Published in Genetics selection evolution (Paris) (07.07.2020)
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The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
Smith, Timothy P L, Bickhart, Derek M, Boichard, Didier, Chamberlain, Amanda J, Djikeng, Appolinaire, Jiang, Yu, Low, Wai Y, Pausch, Hubert, Demyda-Peyrás, Sebastian, Prendergast, James, Schnabel, Robert D, Rosen, Benjamin D
Published in Genome Biology (19.06.2023)
Published in Genome Biology (19.06.2023)
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Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows
Sanchez, Marie-Pierre, Ramayo-Caldas, Yuliaxis, Wolf, Valérie, Laithier, Cécile, El Jabri, Mohammed, Michenet, Alexis, Boussaha, Mekki, Taussat, Sébastien, Fritz, Sébastien, Delacroix-Buchet, Agnès, Brochard, Mickaël, Boichard, Didier
Published in Genetics selection evolution (Paris) (01.07.2019)
Published in Genetics selection evolution (Paris) (01.07.2019)
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Using Sequence Variants in Linkage Disequilibrium with Causative Mutations to Improve Across-Breed Prediction in Dairy Cattle: A Simulation Study
van den Berg, Irene, Boichard, Didier, Guldbrandtsen, Bernt, Lund, Mogens S
Published in G3 : genes - genomes - genetics (01.08.2016)
Published in G3 : genes - genomes - genetics (01.08.2016)
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