CellProfiler 4: improvements in speed, utility and usability
Stirling, David R, Swain-Bowden, Madison J, Lucas, Alice M, Carpenter, Anne E, Cimini, Beth A, Goodman, Allen
Published in BMC bioinformatics (10.09.2021)
Published in BMC bioinformatics (10.09.2021)
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ImageJ2: ImageJ for the next generation of scientific image data
Rueden, Curtis T, Schindelin, Johannes, Hiner, Mark C, DeZonia, Barry E, Walter, Alison E, Arena, Ellen T, Eliceiri, Kevin W
Published in BMC bioinformatics (29.11.2017)
Published in BMC bioinformatics (29.11.2017)
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HH-suite3 for fast remote homology detection and deep protein annotation
Steinegger, Martin, Meier, Markus, Mirdita, Milot, Vöhringer, Harald, Haunsberger, Stephan J, Söding, Johannes
Published in BMC bioinformatics (14.09.2019)
Published in BMC bioinformatics (14.09.2019)
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ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Zhang, Chao, Rabiee, Maryam, Sayyari, Erfan, Mirarab, Siavash
Published in BMC bioinformatics (08.05.2018)
Published in BMC bioinformatics (08.05.2018)
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Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Roach, Michael J, Schmidt, Simon A, Borneman, Anthony R
Published in BMC bioinformatics (29.11.2018)
Published in BMC bioinformatics (29.11.2018)
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Modeling aspects of the language of life through transfer-learning protein sequences
Heinzinger, Michael, Elnaggar, Ahmed, Wang, Yu, Dallago, Christian, Nechaev, Dmitrii, Matthes, Florian, Rost, Burkhard
Published in BMC bioinformatics (17.12.2019)
Published in BMC bioinformatics (17.12.2019)
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Random forest versus logistic regression: a large-scale benchmark experiment
Couronné, Raphael, Probst, Philipp, Boulesteix, Anne-Laure
Published in BMC bioinformatics (17.07.2018)
Published in BMC bioinformatics (17.07.2018)
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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
Uliano-Silva, Marcela, Ferreira, João Gabriel R N, Krasheninnikova, Ksenia, Formenti, Giulio, Abueg, Linelle, Torrance, James, Myers, Eugene W, Durbin, Richard, Blaxter, Mark, McCarthy, Shane A
Published in BMC bioinformatics (18.07.2023)
Published in BMC bioinformatics (18.07.2023)
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InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
Heberle, Henry, Meirelles, Gabriela Vaz, da Silva, Felipe R, Telles, Guilherme P, Minghim, Rosane
Published in BMC bioinformatics (22.05.2015)
Published in BMC bioinformatics (22.05.2015)
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SVM-RFE: selection and visualization of the most relevant features through non-linear kernels
Sanz, Hector, Valim, Clarissa, Vegas, Esteban, Oller, Josep M, Reverter, Ferran
Published in BMC bioinformatics (19.11.2018)
Published in BMC bioinformatics (19.11.2018)
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Reactome pathway analysis: a high-performance in-memory approach
Fabregat, Antonio, Sidiropoulos, Konstantinos, Viteri, Guilherme, Forner, Oscar, Marin-Garcia, Pablo, Arnau, Vicente, D'Eustachio, Peter, Stein, Lincoln, Hermjakob, Henning
Published in BMC bioinformatics (02.03.2017)
Published in BMC bioinformatics (02.03.2017)
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So you think you can PLS-DA?
Ruiz-Perez, Daniel, Guan, Haibin, Madhivanan, Purnima, Mathee, Kalai, Narasimhan, Giri
Published in BMC bioinformatics (09.12.2020)
Published in BMC bioinformatics (09.12.2020)
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MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis
Licursi, Valerio, Conte, Federica, Fiscon, Giulia, Paci, Paola
Published in BMC bioinformatics (04.11.2019)
Published in BMC bioinformatics (04.11.2019)
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ANGSD: Analysis of Next Generation Sequencing Data
Korneliussen, Thorfinn Sand, Albrechtsen, Anders, Nielsen, Rasmus
Published in BMC bioinformatics (25.11.2014)
Published in BMC bioinformatics (25.11.2014)
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MADGAN: unsupervised medical anomaly detection GAN using multiple adjacent brain MRI slice reconstruction
Han, Changhee, Rundo, Leonardo, Murao, Kohei, Noguchi, Tomoyuki, Shimahara, Yuki, Milacski, Zoltán Ádám, Koshino, Saori, Sala, Evis, Nakayama, Hideki, Satoh, Shin'ichi
Published in BMC bioinformatics (26.04.2021)
Published in BMC bioinformatics (26.04.2021)
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Single sample scoring of molecular phenotypes
Foroutan, Momeneh, Bhuva, Dharmesh D, Lyu, Ruqian, Horan, Kristy, Cursons, Joseph, Davis, Melissa J
Published in BMC bioinformatics (06.11.2018)
Published in BMC bioinformatics (06.11.2018)
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