Phylogenies from dynamic networks
Metzig, Cornelia, Ratmann, Oliver, Bezemer, Daniela, Colijn, Caroline
Published in PLoS computational biology (01.02.2019)
Published in PLoS computational biology (01.02.2019)
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Journal Article
Estimating HIV Incidence, Time to Diagnosis, and the Undiagnosed HIV Epidemic Using Routine Surveillance Data
van Sighem, Ard, Nakagawa, Fumiyo, De Angelis, Daniela, Quinten, Chantal, Bezemer, Daniela, de Coul, Eline Op, Egger, Matthias, de Wolf, Frank, Fraser, Christophe, Phillips, Andrew
Published in Epidemiology (Cambridge, Mass.) (01.09.2015)
Published in Epidemiology (Cambridge, Mass.) (01.09.2015)
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Journal Article
Oral HIV pre-exposure prophylaxis use and resistance-associated mutations among men who have sex with men and transgender persons newly diagnosed with HIV in the Netherlands: results from the ATHENA cohort, 2018 to 2022
Jongen, Vita W, Bezemer, Daniela, van Sighem, Ard, Boyd, Anders, Rokx, Casper, Grintjes, Karin, Cents-Bosma, Aafke, Op de Coul, Eline, van Benthem, Birgit, Wensing, Annemarie, Wit, Ferdinand WNM, van der Valk, Marc
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (19.09.2024)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (19.09.2024)
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Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam
Blenkinsop, Alexandra, Monod, Mélodie, van Sighem, Ard, Pantazis, Nikos, Bezemer, Daniela, Op de Coul, Eline, van de Laar, Thijs, Fraser, Christophe, Prins, Maria, Reiss, Peter, de Bree, Godelieve J, Ratmann, Oliver
Published in eLife (03.08.2022)
Published in eLife (03.08.2022)
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Journal Article
Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe
Blanquart, François, Wymant, Chris, Cornelissen, Marion, Gall, Astrid, Bakker, Margreet, Bezemer, Daniela, Hall, Matthew, Hillebregt, Mariska, Ong, Swee Hoe, Albert, Jan, Bannert, Norbert, Fellay, Jacques, Fransen, Katrien, Gourlay, Annabelle J, Grabowski, M Kate, Gunsenheimer-Bartmeyer, Barbara, Günthard, Huldrych F, Kivelä, Pia, Kouyos, Roger, Laeyendecker, Oliver, Liitsola, Kirsi, Meyer, Laurence, Porter, Kholoud, Ristola, Matti, van Sighem, Ard, Vanham, Guido, Berkhout, Ben, Kellam, Paul, Reiss, Peter, Fraser, Christophe
Published in PLoS biology (01.07.2017)
Published in PLoS biology (01.07.2017)
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Viral load levels measured at set-point have risen over the last decade of the HIV epidemic in the Netherlands
Gras, Luuk, Jurriaans, Suzanne, Bakker, Margreet, van Sighem, Ard, Bezemer, Daniela, Fraser, Christophe, Lange, Joep, Prins, Jan M, Berkhout, Ben, de Wolf, Frank
Published in PloS one (07.10.2009)
Published in PloS one (07.10.2009)
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Journal Article
Elimination prospects of the Dutch HIV epidemic among men who have sex with men in the era of preexposure prophylaxis
Rozhnova, Ganna, Heijne, Janneke, Bezemer, Daniela, van Sighem, Ard, Presanis, Anne, De Angelis, Daniela, Kretzschmar, Mirjam
Published in AIDS (London) (13.11.2018)
Published in AIDS (London) (13.11.2018)
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Journal Article
Sources of HIV infection among men having sex with men and implications for prevention
Ratmann, Oliver, van Sighem, Ard, Bezemer, Daniela, Gavryushkina, Alexandra, Jurriaans, Suzanne, Wensing, Annemarie, de Wolf, Frank, Reiss, Peter, Fraser, Christophe
Published in Science translational medicine (06.01.2016)
Published in Science translational medicine (06.01.2016)
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Journal Article
Many but small HIV-1 non-B transmission chains in the Netherlands
Bezemer, Daniela, Blenkinsop, Alexandra, Hall, Matthew, van Sighem, Ard, Cornelissen, Marion, Wessels, Els, van Kampen, Jeroen, van de Laar, Thijs, Reiss, Peter, Fraser, Christophe, Ratmann, Oliver
Published in AIDS (London) (01.01.2022)
Published in AIDS (London) (01.01.2022)
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Journal Article
AIDS Therapy Evaluation in the Netherlands (ATHENA) national observational HIV cohort: cohort profile
Boender, Tamara Sonia, Smit, Colette, Sighem, Ard van, Bezemer, Daniela, Ester, Catriona J, Zaheri, Sima, Wit, Ferdinand W N M, Reiss, Peter
Published in BMJ open (24.09.2018)
Published in BMJ open (24.09.2018)
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Journal Article
Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe
Blanquart, François, Wymant, Chris, Cornelissen, Marion, Gall, Astrid, Bakker, Margreet, Bezemer, Daniela, Hall, Matthew, Hillebregt, Mariska, Ong, Swee Hoe, Albert, Jan, Bannert, Norbert, Fellay, Jacques, Fransen, Katrien, Gourlay, Annabelle J, Grabowski, M Kate, Gunsenheimer-Bartmeyer, Barbara, Günthard, Huldrych F, Kivelä, Pia, Kouyos, Roger, Laeyendecker, Oliver, Liitsola, Kirsi, Meyer, Laurence, Porter, Kholoud, Ristola, Matti, van Sighem, Ard, Vanham, Guido, Berkhout, Ben, Kellam, Paul, Reiss, Peter, Fraser, Christophe
Published in PLoS biology (12.06.2017)
Published in PLoS biology (12.06.2017)
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Impact of frequent testing on the transmission of HIV and N. gonorrhoeae among men who have sex with men: a mathematical modelling study
Reitsema, Maarten, Heijne, Janneke, Visser, Maartje, van Sighem, Ard, Schim van der Loeff, Maarten, op de Coul, Eline L M, Bezemer, Daniela, Wallinga, Jacco, van Benthem, Birgit H B, Xiridou, Maria
Published in Sexually transmitted infections (01.08.2020)
Published in Sexually transmitted infections (01.08.2020)
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Journal Article
A resurgent HIV-1 epidemic among men who have sex with men in the era of potent antiretroviral therapy
Bezemer, Daniela, de Wolf, Frank, Boerlijst, Maarten C, van Sighem, Ard, Hollingsworth, T Deirdre, Prins, Maria, Geskus, Ronald B, Gras, Luuk, Coutinho, Roel A, Fraser, Christophe
Published in AIDS (London) (31.05.2008)
Published in AIDS (London) (31.05.2008)
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From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing
Cornelissen, Marion, Gall, Astrid, Vink, Monique, Zorgdrager, Fokla, Binter, Špela, Edwards, Stephanie, Jurriaans, Suzanne, Bakker, Margreet, Ong, Swee Hoe, Gras, Luuk, van Sighem, Ard, Bezemer, Daniela, de Wolf, Frank, Reiss, Peter, Kellam, Paul, Berkhout, Ben, Fraser, Christophe, van der Kuyl, Antoinette C.
Published in Virus research (15.07.2017)
Published in Virus research (15.07.2017)
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Limited overlap between phylogenetic HIV and hepatitis C virus clusters illustrates the dynamic sexual network structure of Dutch HIV-infected MSM
Vanhommerig, Joost W, Bezemer, Daniela, Molenkamp, Richard, Van Sighem, Ard I, Smit, Colette, Arends, Joop E, Lauw, Fanny N, Brinkman, Kees, Rijnders, Bart J, Newsum, Astrid M, Bruisten, Sylvia M, Prins, Maria, Van Der Meer, Jan T, Van De Laar, Thijs J, Schinkel, Janke
Published in AIDS (London) (24.09.2017)
Published in AIDS (London) (24.09.2017)
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Resurgence of HIV infection among men who have sex with men in Switzerland: mathematical modelling study
van Sighem, Ard, Vidondo, Beatriz, Glass, Tracy R, Bucher, Heiner C, Vernazza, Pietro, Gebhardt, Martin, de Wolf, Frank, Derendinger, Steven, Jeannin, André, Bezemer, Daniela, Fraser, Christophe, Low, Nicola
Published in PloS one (14.09.2012)
Published in PloS one (14.09.2012)
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Phylogenetic evidence for underreporting of male‐to‐male sex among human immunodeficiency virus–infected donors in the Netherlands and Flanders
van de Laar, Thijs J., Bezemer, Daniela, van Laethem, Kristel, Vandewalle, Giovani, de Smet, Annie, van Wijngaerden, Eric, Claas, Eric C., van Sighem, Ard I., Vandamme, Anne‐Mieke, Compernolle, Veerle, Zaaijer, Hans L.
Published in Transfusion (Philadelphia, Pa.) (01.05.2017)
Published in Transfusion (Philadelphia, Pa.) (01.05.2017)
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Transmission networks of HIV-1 among men having sex with men in the Netherlands
BEZEMER, Daniela, VAN SIGHEM, Ard, DE WOLF, Frank, LUKASHOV, Vladimir V, VAN DER HOEK, Lia, BACK, Nicole, SCHUURMAN, Rob, BOUCHER, Charles A. B, CLAAS, Eric C. J, BOERLIJST, Maarten C, COUTINHO, Roel A
Published in AIDS (London) (01.01.2010)
Published in AIDS (London) (01.01.2010)
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Increasing sexual risk behaviour among Dutch men who have sex with men: mathematical models versus prospective cohort data
SIGHEM, Ard Van, JANSEN, Iralice, BEZEMER, Daniela, DE WOLF, Frank, PRINS, Maria, STOLTE, Ineke, FRASER, Christophe
Published in AIDS (London) (10.09.2012)
Published in AIDS (London) (10.09.2012)
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