Free Energy Analysis of the Conformational Preferences of A and B Forms of DNA in Solution
Jayaram, B, Sprous, D, Young, M. A, Beveridge, D. L
Published in Journal of the American Chemical Society (21.10.1998)
Published in Journal of the American Chemical Society (21.10.1998)
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Journal Article
Dynamical Allosterism in the Mechanism of Action of DNA Mismatch Repair Protein MutS
Pieniazek, Susan N., Hingorani, Manju M., Beveridge, D.L.
Published in Biophysical journal (05.10.2011)
Published in Biophysical journal (05.10.2011)
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Journal Article
Exploratory studies of ab initio protein structure prediction: Multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model
Liu, Yongxing, Beveridge, D. L.
Published in Proteins, structure, function, and bioinformatics (01.01.2002)
Published in Proteins, structure, function, and bioinformatics (01.01.2002)
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Journal Article
Local Dielectric Environment of B-DNA in Solution: Results from a 14 ns Molecular Dynamics Trajectory
Young, M. A, Jayaram, B, Beveridge, D. L
Published in The journal of physical chemistry. B (24.09.1998)
Published in The journal of physical chemistry. B (24.09.1998)
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Journal Article
Molecular dynamics simulations of DNA curvature and flexibility: Helix phasing and premelting
Beveridge, D. L., Dixit, Surjit B., Barreiro, Gabriela, Thayer, Kelly M.
Published in Biopolymers (15.02.2004)
Published in Biopolymers (15.02.2004)
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Journal Article
Hidden Markov Models from Molecular Dynamics Simulations on DNA
Thayer, Kelly M., Beveridge, D. L.
Published in Proceedings of the National Academy of Sciences - PNAS (25.06.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (25.06.2002)
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Journal Article
Molecular Dynamics and Thermodynamics of Protein−RNA Interactions: Mutation of a Conserved Aromatic Residue Modifies Stacking Interactions and Structural Adaptation in the U1A−Stem Loop 2 RNA Complex
Blakaj, Dukagjin M, McConnell, Kevin J, Beveridge, David L, Baranger, Anne M
Published in Journal of the American Chemical Society (21.03.2001)
Published in Journal of the American Chemical Society (21.03.2001)
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Journal Article
Molecular Dynamics of a DNA Holliday Junction: The Inverted Repeat Sequence d(CCGGTACCGG)
Wheatley, Elizabeth G, Pieniazek, Susan N, Mukerji, Ishita, Beveridge, D.L
Published in Biophysical journal (08.02.2012)
Published in Biophysical journal (08.02.2012)
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Journal Article
Molecular Dynamics of a DNA Holliday Junction: The Inverted Repeat Sequence d(CCGGTACCGG)4
Wheatley, Elizabeth G., Pieniazek, Susan N., Mukerji, Ishita, Beveridge, D.L.
Published in Biophysical journal (08.02.2012)
Published in Biophysical journal (08.02.2012)
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Journal Article
Assessment of the molecular dynamics structure of DNA in solution based on calculated and observed NMR NOESY volumes and dihedral angles from scalar coupling constants
Arthanari, Haribabu, McConnell, Kevin J., Beger, Richard, Young, Matthew A., Beveridge, D. L., Bolton, Philip H.
Published in Biopolymers (01.01.2003)
Published in Biopolymers (01.01.2003)
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Journal Article
Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes
Young, M.A., Ravishanker, G., Beveridge, D.L., Berman, H.M.
Published in Biophysical journal (01.06.1995)
Published in Biophysical journal (01.06.1995)
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