A molecular cell atlas of the human lung from single-cell RNA sequencing
Travaglini, Kyle J, Nabhan, Ahmad N, Penland, Lolita, Sinha, Rahul, Gillich, Astrid, Sit, Rene V, Chang, Stephen, Conley, Stephanie D, Mori, Yasuo, Seita, Jun, Berry, Gerald J, Shrager, Joseph B, Metzger, Ross J, Kuo, Christin S, Neff, Norma, Weissman, Irving L, Quake, Stephen R, Krasnow, Mark A
Published in Nature (London) (26.11.2020)
Published in Nature (London) (26.11.2020)
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Journal Article
Immunoinhibitory checkpoint deficiency in medium and large vessel vasculitis
Zhang, Hui, Watanabe, Ryu, Berry, Gerald J., Vaglio, Augusto, Liao, Yaping Joyce, Warrington, Kenneth J., Goronzy, Jörg J., Weyand, Cornelia M.
Published in Proceedings of the National Academy of Sciences - PNAS (07.02.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (07.02.2017)
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Journal Article
Cell-Free DNA to Detect Heart Allograft Acute Rejection
Agbor-Enoh, Sean, Shah, Palak, Tunc, Ilker, Hsu, Steven, Russell, Stuart, Feller, Erika, Shah, Keyur, Rodrigo, Maria E, Najjar, Samer S, Kong, Hyesik, Pirooznia, Mehdi, Fideli, Ulgen, Bikineyeva, Alfiya, Marishta, Argit, Bhatti, Kenneth, Yang, Yanqin, Mutebi, Cedric, Yu, Kai, Kyoo Jang, Moon, Marboe, Charles, Berry, Gerald J, Valantine, Hannah A
Published in Circulation (New York, N.Y.) (23.03.2021)
Published in Circulation (New York, N.Y.) (23.03.2021)
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Journal Article
Deep learning model for the prediction of microsatellite instability in colorectal cancer: a diagnostic study
Yamashita, Rikiya, Long, Jin, Longacre, Teri, Peng, Lan, Berry, Gerald, Martin, Brock, Higgins, John, Rubin, Daniel L, Shen, Jeanne
Published in The lancet oncology (01.01.2021)
Published in The lancet oncology (01.01.2021)
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Journal Article
The DNA Repair Nuclease MRE11A Functions as a Mitochondrial Protector and Prevents T Cell Pyroptosis and Tissue Inflammation
Li, Yinyin, Shen, Yi, Jin, Ke, Wen, Zhenke, Cao, Wenqiang, Wu, Bowen, Wen, Ru, Tian, Lu, Berry, Gerald J., Goronzy, Jorg J., Weyand, Cornelia M.
Published in Cell metabolism (03.09.2019)
Published in Cell metabolism (03.09.2019)
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Journal Article
The 2013 International Society for Heart and Lung Transplantation Working Formulation for the standardization of nomenclature in the pathologic diagnosis of antibody-mediated rejection in heart transplantation
Berry, Gerald J., MD, Burke, Margaret M., FRCPath, Andersen, Claus, MD, Bruneval, Patrick, MD, Fedrigo, Marny, MD, PhD, Fishbein, Michael C., MD, Goddard, Martin, MD, Hammond, Elizabeth H., MD, Leone, Ornella, MD, Marboe, Charles, MD, Miller, Dylan, MD, Neil, Desley, MD, Rassl, Doris, MD, Revelo, Monica P., MD, Rice, Alexandra, FRCPath, Rene Rodriguez, E., MD, Stewart, Susan, FRCPath, Tan, Carmela D., MD, Winters, Gayle L., MD, West, Lori, MD, Mehra, Mandeep R., MD, Angelini, Annalisa, MD
Published in The Journal of heart and lung transplantation (01.12.2013)
Published in The Journal of heart and lung transplantation (01.12.2013)
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Journal Article
Conference Proceeding
Antibody-mediated rejection of the lung: A consensus report of the International Society for Heart and Lung Transplantation
Levine, Deborah J., Glanville, Allan R., Aboyoun, Christina, Belperio, John, Benden, Christian, Berry, Gerald J., Hachem, Ramsey, Hayes, Don, Neil, Desley, Reinsmoen, Nancy L., Snyder, Laurie D., Sweet, Stuart, Tyan, Dolly, Verleden, Geert, Westall, Glen, Yusen, Roger D., Zamora, Martin, Zeevi, Adriana
Published in The Journal of heart and lung transplantation (01.04.2016)
Published in The Journal of heart and lung transplantation (01.04.2016)
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Journal Article
MMP (Matrix Metalloprotease)-9–Producing Monocytes Enable T Cells to Invade the Vessel Wall and Cause Vasculitis
Watanabe, Ryu, Maeda, Toshihisa, Zhang, Hui, Berry, Gerald J, Zeisbrich, Markus, Brockett, Robert, Greenstein, Andrew E, Tian, Lu, Goronzy, Jörg J, Weyand, Cornelia M
Published in Circulation research (31.08.2018)
Published in Circulation research (31.08.2018)
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Journal Article
Metabolic Control of Autoimmunity and Tissue Inflammation in Rheumatoid Arthritis
Qiu, Jingtao, Wu, Bowen, Goodman, Stuart B, Berry, Gerald J, Goronzy, Jorg J, Weyand, Cornelia M
Published in Frontiers in immunology (02.04.2021)
Published in Frontiers in immunology (02.04.2021)
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Journal Article
The immunoinhibitory PD‐1/PD‐L1 pathway in inflammatory blood vessel disease
Weyand, Cornelia M., Berry, Gerald J., Goronzy, Jörg J.
Published in Journal of leukocyte biology (01.03.2018)
Published in Journal of leukocyte biology (01.03.2018)
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Journal Article
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks
Yu, Kun-Hsing, Wang, Feiran, Berry, Gerald J, Ré, Christopher, Altman, Russ B, Snyder, Michael, Kohane, Isaac S
Published in Journal of the American Medical Informatics Association : JAMIA (01.05.2020)
Published in Journal of the American Medical Informatics Association : JAMIA (01.05.2020)
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Journal Article
Non-Small Cell Lung Cancer Radiogenomics Map Identifies Relationships between Molecular and Imaging Phenotypes with Prognostic Implications
Zhou, Mu, Leung, Ann, Echegaray, Sebastian, Gentles, Andrew, Shrager, Joseph B, Jensen, Kristin C, Berry, Gerald J, Plevritis, Sylvia K, Rubin, Daniel L, Napel, Sandy, Gevaert, Olivier
Published in Radiology (01.01.2018)
Published in Radiology (01.01.2018)
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Journal Article
Radiology-Pathology Correlation Demonstrating Organizing Pneumonia in a Patient Who Recovered from COVID-19
Pogatchnik, Brian P, Swenson, Kai E, Sharifi, Husham, Bedi, Harmeet, Berry, Gerald J, Guo, H Henry
Published in American journal of respiratory and critical care medicine (15.08.2020)
Published in American journal of respiratory and critical care medicine (15.08.2020)
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Journal Article
Age as a risk factor in vasculitis
Gloor, Andrea D., Berry, Gerald J., Goronzy, Jorg J., Weyand, Cornelia M.
Published in Seminars in immunopathology (01.05.2022)
Published in Seminars in immunopathology (01.05.2022)
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Journal Article
A critical role for the mTORC2 pathway in lung fibrosis
Chang, Wenteh, Wei, Ke, Ho, Lawrence, Berry, Gerald J, Jacobs, Susan S, Chang, Cheryl H, Rosen, Glenn D
Published in PloS one (27.08.2014)
Published in PloS one (27.08.2014)
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Molecular assessment of surgical-resection margins of gastric cancer by mass-spectrometric imaging
Eberlin, Livia S., Tibshirani, Robert J., Zhang, Jialing, Longacre, Teri A., Berry, Gerald J., Bingham, David B., Norton, Jeffrey A., Zare, Richard N., Poultsides, George A.
Published in Proceedings of the National Academy of Sciences - PNAS (18.02.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (18.02.2014)
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Journal Article
Pathogenesis of Giant Cell Arteritis and Takayasu Arteritis—Similarities and Differences
Watanabe, Ryu, Berry, Gerald J., Liang, David H., Goronzy, Jörg J., Weyand, Cornelia M.
Published in Current rheumatology reports (26.08.2020)
Published in Current rheumatology reports (26.08.2020)
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Journal Article
NOTCH-induced rerouting of endosomal trafficking disables regulatory T cells in vasculitis
Jin, Ke, Wen, Zhenke, Wu, Bowen, Zhang, Hui, Qiu, Jingtao, Wang, Yanan, Warrington, Kenneth J, Berry, Gerald J, Goronzy, Jorg J, Weyand, Cornelia M
Published in The Journal of clinical investigation (01.01.2021)
Published in The Journal of clinical investigation (01.01.2021)
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